SRR1547070_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547070_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	999371
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5251	0.5254304957818469	No Hit
TGAATGATACCTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCC	3616	0.3618275895538293	No Hit
TGAATCTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCCGTCTT	1680	0.16810573850952248	No Hit
TGAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATG	1264	0.12647955564049787	No Hit
TGAACTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCCGTCTTC	1147	0.11477219170858469	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATAG	30	2.1652158E-6	45.000004	1
CGTATCC	20	7.032846E-4	45.0	23
CGTATCA	20	7.032846E-4	45.0	36
GTCGACG	25	3.8904393E-5	45.0	1
ACCGCGA	25	3.8904393E-5	45.0	32
ACTCGTC	20	7.032846E-4	45.0	14
CGTTTTT	3550	0.0	42.46479	1
CGTAAGG	135	0.0	41.666664	2
GACGGGT	170	0.0	41.02941	4
CGATTGA	965	0.0	40.569946	20
TTCGATA	50	1.0804797E-9	40.5	15
TCAACGG	50	1.0804797E-9	40.5	2
ATTAGCG	95	0.0	40.263157	1
ATAGGGC	455	0.0	40.054943	4
TAACGGG	265	0.0	39.905663	3
ATTGAAT	1005	0.0	39.850746	22
CGTTAGG	85	0.0	39.705883	2
TTAACGG	85	0.0	39.705883	2
ATATCGG	40	3.457626E-7	39.375	2
GCGATAA	80	0.0	39.375	9