SRR1547065_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547065_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1033746
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6960	0.6732795096667847	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTC	1581	0.15293892310103255	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCG	1396	0.1350428441802919	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGC	1248	0.12072598104369932	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1052	0.10176581094388758	No Hit

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATAT	20	7.032958E-4	45.0	25
TAACGCC	40	6.8139343E-9	45.0	12
GTTACGT	20	7.032958E-4	45.0	25
CGTTTTT	3690	0.0	42.5	1
GTATGCG	70	0.0	41.785713	1
CGGTCTA	100	0.0	40.5	31
GTCGAAT	45	1.9279469E-8	40.0	43
TATAGCG	80	0.0	39.375	1
GGGCGAT	1285	0.0	38.6965	7
TCACGAC	105	0.0	38.57143	25
GACGTAG	35	6.2476793E-6	38.571426	1
GCGTAAG	140	0.0	38.571426	1
AACGGGA	310	0.0	38.46774	4
CGATGAA	505	0.0	38.316833	19
CCGATGA	500	0.0	38.25	18
TAGGGCA	485	0.0	38.041237	5
TCTAACG	30	1.1398422E-4	37.500004	1
GTTTTTT	4660	0.0	36.936695	2
AGGGCGA	780	0.0	36.923077	6
TTAGGGA	825	0.0	36.81818	4