##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547065_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1033746 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.66012250591538 31.0 31.0 33.0 30.0 34.0 2 32.04774383649369 33.0 31.0 34.0 30.0 34.0 3 32.137548295229195 33.0 31.0 34.0 30.0 34.0 4 35.82840078704053 37.0 35.0 37.0 35.0 37.0 5 35.76839378338586 37.0 35.0 37.0 35.0 37.0 6 35.8276181963461 37.0 35.0 37.0 35.0 37.0 7 36.09322115877595 37.0 35.0 37.0 35.0 37.0 8 36.0218496613288 37.0 35.0 37.0 35.0 37.0 9 37.80456127520687 39.0 38.0 39.0 35.0 39.0 10 37.42806259951671 39.0 37.0 39.0 35.0 39.0 11 37.1322926521602 39.0 37.0 39.0 33.0 39.0 12 36.42651869995144 38.0 35.0 39.0 33.0 39.0 13 36.12829166932689 38.0 35.0 39.0 32.0 39.0 14 37.13569774393323 39.0 35.0 41.0 32.0 41.0 15 37.31793690132779 39.0 35.0 41.0 32.0 41.0 16 37.46257107645398 39.0 35.0 41.0 33.0 41.0 17 37.41276773985099 39.0 35.0 41.0 33.0 41.0 18 37.32606946000275 39.0 35.0 41.0 33.0 41.0 19 37.262644788952024 39.0 35.0 41.0 32.0 41.0 20 37.06428368283892 39.0 35.0 41.0 32.0 41.0 21 36.996256333760904 38.0 35.0 41.0 32.0 41.0 22 36.91901879185022 38.0 35.0 41.0 32.0 41.0 23 36.86897458369851 38.0 35.0 41.0 32.0 41.0 24 36.80861449524351 38.0 35.0 41.0 32.0 41.0 25 36.725605709719794 38.0 35.0 41.0 32.0 41.0 26 36.55446599067856 38.0 35.0 41.0 31.0 41.0 27 36.428328622311476 38.0 35.0 41.0 31.0 41.0 28 36.467082823053246 38.0 35.0 41.0 31.0 41.0 29 36.48898472158538 38.0 35.0 41.0 31.0 41.0 30 36.42802487264763 38.0 35.0 40.0 31.0 41.0 31 36.29836246041097 38.0 35.0 40.0 31.0 41.0 32 36.16353533653334 38.0 35.0 41.0 30.0 41.0 33 36.040871742188116 38.0 35.0 41.0 30.0 41.0 34 35.85291744780633 38.0 35.0 41.0 30.0 41.0 35 35.75632118528149 38.0 35.0 41.0 30.0 41.0 36 35.65323493391994 38.0 35.0 41.0 29.0 41.0 37 35.56167665945019 38.0 35.0 40.0 29.0 41.0 38 35.48436269644574 37.0 35.0 40.0 29.0 41.0 39 35.39156330471896 37.0 35.0 40.0 29.0 41.0 40 35.24986311918015 37.0 34.0 40.0 28.0 41.0 41 35.20757033159016 37.0 34.0 40.0 28.0 41.0 42 35.09927390287363 37.0 34.0 40.0 27.0 41.0 43 34.97522989206246 36.0 34.0 40.0 27.0 41.0 44 34.853994114608426 36.0 34.0 40.0 27.0 41.0 45 34.768805876878844 36.0 34.0 40.0 26.0 41.0 46 34.73643525585589 36.0 34.0 40.0 26.0 41.0 47 34.67665945019376 35.0 34.0 40.0 26.0 41.0 48 34.61167249982104 35.0 34.0 40.0 26.0 41.0 49 34.5502222015853 35.0 34.0 40.0 26.0 41.0 50 34.43703288815628 35.0 34.0 40.0 26.0 41.0 51 34.086726333161145 35.0 33.0 39.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 1.0 12 5.0 13 6.0 14 14.0 15 27.0 16 78.0 17 186.0 18 421.0 19 722.0 20 1407.0 21 2470.0 22 3748.0 23 5403.0 24 7330.0 25 10418.0 26 13806.0 27 16350.0 28 17767.0 29 19186.0 30 22552.0 31 27536.0 32 34645.0 33 46513.0 34 87786.0 35 146636.0 36 72236.0 37 95227.0 38 140034.0 39 261004.0 40 230.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.64680879055397 22.44119928880015 28.566495057780152 14.345496862865733 2 31.97303786423357 25.200290980569694 29.213172287970156 13.613498867226573 3 29.167706573955304 25.706314703998856 31.866338539641266 13.259640182404574 4 26.609631379468457 26.403487897413875 31.953400545201628 15.033480177916045 5 24.405898547612274 31.021063201211902 29.396873119702523 15.1761651314733 6 22.279554165143082 40.44649265873822 26.187961065871114 11.085992110247584 7 85.90688621769758 3.8657465180034554 8.110019289071008 2.1173479752279576 8 87.08773721978126 3.6241010847925894 7.084332128008235 2.203829567417915 9 82.74721256478864 4.466280885246472 8.589440733023393 4.1970658169414925 10 51.62496396600326 22.315830000793234 13.646195487092575 12.413010546110941 11 42.75566725288417 20.87592116438661 20.614348205458594 15.754063377270624 12 36.716562869408925 19.754949475016108 25.602710917382026 17.92577673819294 13 25.490497665770896 29.163353473677283 27.10820646464412 18.237942395907698 14 19.618842539656743 32.529557550887745 29.53298005506188 18.318619854393635 15 18.786723237623168 22.07795725448998 41.07498360332229 18.060335904564564 16 22.348042942850565 19.361139003198076 38.192650805903966 20.098167248047393 17 22.99442996635537 20.029581734778176 27.32324961837821 29.652738680488245 18 25.265877691425164 22.74872163955169 30.535063739061624 21.45033692996152 19 28.871599019488347 23.963333352680447 25.27738922327148 21.887678404559725 20 31.35634865818102 23.613053883642596 24.023889814325763 21.006707643850618 21 26.71120371928888 25.60387174412283 27.039234009127966 20.645690527460324 22 25.315599770156304 21.368401909173045 28.19773909645116 25.118259224219493 23 24.42253706423048 25.835650150036855 26.26631687087544 23.475495914857227 24 24.047976969197464 23.463790911887447 31.054243498886574 21.43398862002852 25 22.469252601702934 23.519607331007812 30.106234993895985 23.90490507339327 26 21.051496208933333 27.963929243740726 27.21829153389711 23.76628301342883 27 22.01053256796157 26.408227939938822 28.96359453869713 22.61764495340248 28 19.584985093049937 25.94737972383932 33.53280206162829 20.934833121482452 29 21.71258703782167 23.665581293664015 32.87045367043741 21.751377998076897 30 23.528700473810783 24.594436157431325 30.54802630433395 21.32883706442395 31 29.107633790118655 22.80860095226487 25.42965099744038 22.654114260176097 32 30.17839972294935 24.367494529603984 25.575141282287913 19.878964465158752 33 28.20489752801946 24.094893716638325 25.84590411958063 21.85430463576159 34 22.822434137592793 25.538381768829094 28.746810144851832 22.892373948726284 35 23.964397443859518 25.092527564798317 28.275901430332016 22.667173561010152 36 28.41123448119751 25.079274792840796 25.22292710201539 21.286563623946307 37 24.722804247851986 26.893550253156967 26.31168584932856 22.07195964966249 38 24.16715518125342 29.089931182321383 22.68448922656049 24.058424409864706 39 24.436950662928805 26.329968870496234 24.826408034468816 24.40667243210615 40 24.81770183391278 23.49368220046317 25.57697925796085 26.111636707663198 41 21.55248968315234 23.468240747727197 26.361311192497965 28.6179583766225 42 24.127396865380856 24.877387675502494 24.969479930273007 26.02573552884364 43 23.893393541546956 24.537942589378822 25.751296740205042 25.81736712886918 44 23.070077175631152 26.417224347180063 26.968617049062342 23.544081428126447 45 21.934498416438856 27.84697594960464 25.214027430335882 25.004498203620617 46 24.289815873531793 26.488905398424755 26.97606568731584 22.245213040727606 47 23.64168760991578 24.21165353965094 28.005138593039298 24.141520257393985 48 24.29358856043941 23.12463603244898 28.457764286391434 24.124011120720176 49 23.233463539399427 22.105817096269295 29.73012712987523 24.930592234456046 50 21.87345827698487 26.6527754400017 27.093309188137127 24.380457094876302 51 21.305717265169587 27.682041816848624 26.02854086013392 24.983700057847866 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 439.0 1 986.5 2 1534.0 3 6719.0 4 11904.0 5 8087.5 6 4271.0 7 4245.0 8 4219.0 9 4284.5 10 4350.0 11 4326.5 12 4303.0 13 4124.0 14 3945.0 15 3766.5 16 3588.0 17 3428.5 18 3269.0 19 3089.0 20 2909.0 21 3023.5 22 3138.0 23 3216.0 24 3294.0 25 3670.5 26 4877.0 27 5707.0 28 6622.5 29 7538.0 30 8597.0 31 9656.0 32 11460.5 33 13265.0 34 14224.0 35 15183.0 36 18210.0 37 21237.0 38 24051.0 39 26865.0 40 36762.5 41 46660.0 42 57046.5 43 67433.0 44 70249.5 45 73066.0 46 75635.5 47 78205.0 48 77320.0 49 76435.0 50 77122.0 51 77809.0 52 74596.5 53 71384.0 54 65947.5 55 60511.0 56 60357.5 57 60204.0 58 58956.5 59 57709.0 60 56395.5 61 55082.0 62 50040.0 63 44998.0 64 40975.0 65 36952.0 66 31712.0 67 26472.0 68 21650.0 69 16828.0 70 14205.0 71 11582.0 72 9802.5 73 8023.0 74 6354.0 75 3647.5 76 2610.0 77 1992.0 78 1374.0 79 948.0 80 522.0 81 412.5 82 303.0 83 224.5 84 146.0 85 95.5 86 45.0 87 30.5 88 16.0 89 12.5 90 9.0 91 9.0 92 9.0 93 8.0 94 7.0 95 4.5 96 2.0 97 3.0 98 4.0 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1033746.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.776137453215433 #Duplication Level Percentage of deduplicated Percentage of total 1 77.24449164306117 18.365756508091728 2 5.930682928804018 2.8201746501336524 3 2.1748922894543434 1.5513161406001463 4 1.255358762846311 1.1939032999412946 5 0.9458947635259993 1.1244861956935435 6 0.7075128258672795 1.009315331863999 7 0.5776372062004478 0.9613787128899234 8 0.5311456661011776 1.0102873891921016 9 0.46530047861668006 0.99567433229734 >10 9.31799900025107 56.41797171833658 >50 0.8077156328059758 11.602178430861326 >100 0.03768247353300339 1.5498851644337113 >500 0.0016383684144784083 0.20596965898694938 >1k 0.0016383684144784083 0.5139016030610553 >5k 4.0959210361960207E-4 0.6778008636166278 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6960 0.6732795096667847 No Hit GAATCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTC 1581 0.15293892310103255 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCG 1396 0.1350428441802919 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGC 1248 0.12072598104369932 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1052 0.10176581094388758 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.673556173373344E-5 0.0 0.0 0.03569542227974764 0.0 2 9.673556173373344E-5 0.0 0.0 0.1275942059267944 0.0 3 9.673556173373344E-5 0.0 0.0 0.19405153683786927 0.0 4 9.673556173373344E-5 0.0 0.0 0.3312225633763033 0.0 5 9.673556173373344E-5 0.0 0.0 0.712360676607213 0.0 6 9.673556173373344E-5 0.0 0.0 1.0572229541879727 0.0 7 9.673556173373344E-5 0.0 0.0 1.3138623994675676 0.0 8 9.673556173373344E-5 0.0 0.0 1.8742515085910851 0.0 9 9.673556173373344E-5 0.0 0.0 2.176937081255937 0.0 10 9.673556173373344E-5 0.0 0.0 2.70637081062466 0.0 11 9.673556173373344E-5 0.0 0.0 3.027242668895454 0.0 12 9.673556173373344E-5 0.0 0.0 3.4306299613251223 0.0 13 9.673556173373344E-5 0.0 0.0 3.56944549241303 0.0 14 9.673556173373344E-5 0.0 0.0 3.6323236075399565 0.0 15 9.673556173373344E-5 0.0 0.0 3.718514993044713 0.0 16 1.9347112346746687E-4 0.0 0.0 3.852880688292869 0.0 17 1.9347112346746687E-4 0.0 0.0 4.000208948813345 0.0 18 0.004546571401485471 0.0 0.0 4.202579743960316 0.0 19 0.004546571401485471 0.0 0.0 4.340814861677821 0.0 20 0.004546571401485471 0.0 0.0 4.474019730185171 0.0 21 0.004546571401485471 0.0 0.0 4.620767577335245 0.0 22 0.004546571401485471 0.0 0.0 4.7866690657085975 0.0 23 0.004546571401485471 0.0 0.0 4.958084481100773 0.0 24 0.004546571401485471 0.0 0.0 5.091869762978527 0.0 25 0.004546571401485471 0.0 0.0 5.197214789706562 0.0 26 0.004546571401485471 0.0 0.0 5.306139032218746 0.0 27 0.004546571401485471 0.0 0.0 5.432378940281268 0.0 28 0.004546571401485471 0.0 0.0 5.55213756570763 0.0 29 0.004546571401485471 0.0 0.0 5.689695534493 0.0 30 0.004546571401485471 0.0 0.0 5.880071119984986 0.0 31 0.004643306963219205 0.0 0.0 6.027109173820262 0.0 32 0.004643306963219205 0.0 0.0 6.176468881137146 0.0 33 0.004643306963219205 0.0 0.0 6.324184083904557 0.0 34 0.004643306963219205 0.0 0.0 6.4768328003203886 0.0 35 0.004643306963219205 0.0 0.0 6.647087388971759 0.0 36 0.004643306963219205 0.0 0.0 6.807861892573224 0.0 37 0.004643306963219205 0.0 0.0 6.973279703137909 0.0 38 0.004643306963219205 0.0 0.0 7.195674759563762 0.0 39 0.004643306963219205 0.0 0.0 7.516353146711087 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATAT 20 7.032958E-4 45.0 25 TAACGCC 40 6.8139343E-9 45.0 12 GTTACGT 20 7.032958E-4 45.0 25 CGTTTTT 3690 0.0 42.5 1 GTATGCG 70 0.0 41.785713 1 CGGTCTA 100 0.0 40.5 31 GTCGAAT 45 1.9279469E-8 40.0 43 TATAGCG 80 0.0 39.375 1 GGGCGAT 1285 0.0 38.6965 7 TCACGAC 105 0.0 38.57143 25 GACGTAG 35 6.2476793E-6 38.571426 1 GCGTAAG 140 0.0 38.571426 1 AACGGGA 310 0.0 38.46774 4 CGATGAA 505 0.0 38.316833 19 CCGATGA 500 0.0 38.25 18 TAGGGCA 485 0.0 38.041237 5 TCTAACG 30 1.1398422E-4 37.500004 1 GTTTTTT 4660 0.0 36.936695 2 AGGGCGA 780 0.0 36.923077 6 TTAGGGA 825 0.0 36.81818 4 >>END_MODULE