##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547056_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 951688 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.613787291633393 31.0 31.0 33.0 30.0 34.0 2 31.982166424290313 31.0 31.0 34.0 30.0 34.0 3 32.028353830246886 33.0 31.0 34.0 30.0 34.0 4 35.733079538672335 37.0 35.0 37.0 33.0 37.0 5 35.671009826749945 37.0 35.0 37.0 33.0 37.0 6 35.724795311068334 37.0 35.0 37.0 33.0 37.0 7 36.09132614890594 37.0 35.0 37.0 35.0 37.0 8 36.04967069039433 37.0 35.0 37.0 35.0 37.0 9 37.86071905918747 39.0 38.0 39.0 35.0 39.0 10 37.39027391329932 39.0 37.0 39.0 35.0 39.0 11 37.02741024369331 39.0 37.0 39.0 33.0 39.0 12 36.199647363421626 38.0 35.0 39.0 32.0 39.0 13 35.79705743899261 38.0 35.0 39.0 31.0 39.0 14 36.79037457654189 39.0 35.0 41.0 31.0 41.0 15 37.07091504778877 39.0 35.0 41.0 32.0 41.0 16 37.25828737989762 39.0 35.0 41.0 33.0 41.0 17 37.23054719613991 39.0 35.0 41.0 33.0 41.0 18 37.15213494338481 38.0 35.0 41.0 32.0 41.0 19 37.0734127150915 38.0 35.0 41.0 32.0 41.0 20 36.85590235455317 38.0 35.0 41.0 32.0 41.0 21 36.77255150847757 38.0 35.0 41.0 32.0 41.0 22 36.66716402854717 38.0 35.0 41.0 32.0 41.0 23 36.651309042459296 38.0 35.0 41.0 32.0 41.0 24 36.53754066458755 38.0 35.0 41.0 32.0 41.0 25 36.43510057918141 37.0 35.0 40.0 32.0 41.0 26 36.27672199292205 37.0 35.0 40.0 31.0 41.0 27 36.1856911088508 37.0 35.0 40.0 31.0 41.0 28 36.229253704995756 37.0 35.0 40.0 31.0 41.0 29 36.275895041232 37.0 35.0 40.0 31.0 41.0 30 36.253692386580475 37.0 35.0 40.0 31.0 41.0 31 36.09728923764931 37.0 35.0 40.0 31.0 41.0 32 35.901675759282455 37.0 35.0 40.0 30.0 41.0 33 35.74341590941569 37.0 35.0 40.0 30.0 41.0 34 35.592550289590704 37.0 35.0 40.0 30.0 41.0 35 35.48810744697842 37.0 35.0 40.0 29.0 41.0 36 35.341577281630116 37.0 35.0 40.0 29.0 41.0 37 35.24721862627248 37.0 35.0 40.0 28.0 41.0 38 35.18636359815402 37.0 34.0 40.0 28.0 41.0 39 35.133018384176324 36.0 34.0 40.0 27.0 41.0 40 34.9966921932398 36.0 34.0 40.0 27.0 41.0 41 34.988058061045216 36.0 34.0 40.0 27.0 41.0 42 34.89839632316473 36.0 34.0 40.0 27.0 41.0 43 34.77054349744874 36.0 34.0 40.0 26.0 41.0 44 34.57458746984306 35.0 34.0 40.0 26.0 41.0 45 34.501499440993264 35.0 34.0 40.0 25.0 41.0 46 34.489752944242234 35.0 34.0 40.0 25.0 41.0 47 34.4509702759728 35.0 34.0 40.0 25.0 41.0 48 34.38868725884954 35.0 34.0 40.0 25.0 41.0 49 34.33954089995881 36.0 34.0 40.0 25.0 41.0 50 34.19931216953455 35.0 34.0 40.0 24.0 41.0 51 33.82549112734426 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 5.0 12 2.0 13 4.0 14 9.0 15 23.0 16 54.0 17 156.0 18 348.0 19 787.0 20 1311.0 21 2052.0 22 3387.0 23 4911.0 24 7360.0 25 10920.0 26 14418.0 27 16662.0 28 17368.0 29 18783.0 30 21996.0 31 26568.0 32 33088.0 33 44536.0 34 83090.0 35 158970.0 36 63645.0 37 77704.0 38 114340.0 39 228971.0 40 220.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.63475004413211 23.053143467186725 29.72066475567623 14.591441733004935 2 31.35397315086457 25.536835601583714 30.025071241835562 13.08412000571616 3 27.78683770311278 24.808025319222267 33.800783450038246 13.6043535276267 4 25.37207572229554 26.852077571641125 33.56236497675709 14.213481729306244 5 23.393065794672204 31.715436151343717 31.074259631307736 13.81723842267634 6 20.85032069333647 40.00092467279192 28.01642975428922 11.132324879582384 7 86.15565185228773 3.648884928674103 8.403069073057557 1.7923941459806154 8 87.35520464690109 2.6678911576062743 7.720177200931398 2.2567269945612427 9 83.8139180067417 3.889299854574188 9.160565227259355 3.1362169114247522 10 52.61377678398803 22.976227503131277 13.34124208774304 11.068753625137651 11 43.51184421785291 21.515980027067695 21.51871201486201 13.453463740217384 12 38.14926740696531 21.101978799774717 25.248400736375785 15.500353056884189 13 21.736010120964014 36.91545968846933 26.681748640310687 14.666781550255967 14 15.570859357268349 39.8006489521776 29.53089668042468 15.09759501012937 15 14.45967586015585 23.901740906683703 46.73191213927254 14.906671093887914 16 16.816330562116995 19.98165365119661 44.29939223779222 18.902623548894177 17 17.118635519203774 20.567244727263557 29.29100713679273 33.023112616739944 18 21.591845226586866 23.78909894839485 33.86120241087415 20.75785341414413 19 27.606736661594976 25.65945982296719 26.29800943166248 20.435794083775356 20 29.911798824824942 24.23462311177613 24.988021284286447 20.86555677911248 21 22.257504560318086 28.44871428451341 28.463635140928538 20.83014601423996 22 22.164406822403983 24.120825312497374 27.350034885382605 26.364732979716045 23 19.976925210783367 29.702591605652273 25.850173586301395 24.47030959726297 24 20.35709182000824 24.43353283849329 36.440724270979565 18.76865107051891 25 18.266595775085953 26.166979093988786 33.98508754970116 21.5813375812241 26 17.489765553416667 33.904598986222375 27.5266684039307 21.07896705643026 27 18.97922428358874 31.663843612612535 29.410058758752868 19.946873345045855 28 16.485865115458008 27.52803439782786 37.88930826069048 18.096792226023656 29 16.55122266961441 24.611532350938543 36.2820588260018 22.55518615344525 30 19.361177192525282 28.15912357831558 31.645875539042205 20.83382369011693 31 27.940039172501912 25.70422239221257 24.89366262892881 21.462075806356708 32 28.160699725119997 27.573952808063147 25.064411866073755 19.2009356007431 33 25.655151688368456 27.315779961499985 25.014080244786108 22.01498810534545 34 18.847038104925144 28.385143030068676 28.391027311471827 24.376791553534353 35 19.64772068156791 26.341406007010704 29.86398903842436 24.14688427299703 36 28.030509999075328 24.67352745857886 26.59768747740856 20.69827506493725 37 20.786434209530853 29.589214112188028 28.75911012852952 20.865241549751598 38 20.51365573591345 31.193416329721508 24.553214919175193 23.739713015189853 39 21.423933053689865 29.21240994947924 27.07420919461 22.289447802220895 40 22.848454535520045 25.53872697774901 26.68931414497188 24.923504341759063 41 18.363476265330654 24.537768680491926 27.51405922949538 29.58469582468204 42 22.67665453383882 26.690469985961784 24.75580232176932 25.877073158430075 43 22.69294138415111 26.735757937475306 25.736585939929896 24.83471473844369 44 20.962752498718068 30.267062314540063 27.1445053420869 21.62567984465497 45 18.30526391002093 33.81150124830827 23.521889526819713 24.361345314851086 46 22.959730499911736 29.96843503333025 26.062322946175637 21.009511520582375 47 21.687359722934406 26.44858398971091 27.812371281344305 24.051685006010374 48 23.591345062667596 24.14835534334782 29.32999050108859 22.930309092895993 49 21.508204369499246 22.899101386168578 30.66120409209741 24.931490152234765 50 19.17771370449139 30.29890047998924 27.725788283555115 22.797597531964257 51 18.71338085591076 31.52945082842276 24.67352745857886 25.08364085708762 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 652.0 1 845.5 2 1039.0 3 6545.0 4 12051.0 5 8151.5 6 4252.0 7 4354.0 8 4456.0 9 4905.0 10 5354.0 11 5569.0 12 5784.0 13 5797.0 14 5810.0 15 5602.0 16 5394.0 17 5135.0 18 4876.0 19 4577.0 20 4278.0 21 4162.5 22 4047.0 23 4292.0 24 4537.0 25 4981.0 26 5553.5 27 5682.0 28 7007.0 29 8332.0 30 9414.5 31 10497.0 32 12195.0 33 13893.0 34 15772.5 35 17652.0 36 19874.5 37 22097.0 38 26389.5 39 30682.0 40 43496.0 41 56310.0 42 69406.0 43 82502.0 44 86135.5 45 89769.0 46 91448.5 47 93128.0 48 91274.0 49 89420.0 50 83479.0 51 77538.0 52 70150.5 53 62763.0 54 55856.0 55 48949.0 56 45282.5 57 41616.0 58 39316.5 59 37017.0 60 32153.5 61 27290.0 62 24278.0 63 21266.0 64 18667.5 65 16069.0 66 13689.5 67 11310.0 68 9560.0 69 7810.0 70 6307.0 71 4804.0 72 4121.5 73 3439.0 74 2628.5 75 1424.5 76 1031.0 77 798.0 78 565.0 79 451.5 80 338.0 81 205.0 82 72.0 83 57.5 84 43.0 85 29.0 86 15.0 87 11.5 88 8.0 89 7.5 90 7.0 91 4.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 951688.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.98392514913043 #Duplication Level Percentage of deduplicated Percentage of total 1 78.62565896168734 21.216288962232277 2 7.42137495922615 4.005156528067787 3 2.6132490505651247 2.115471503294565 4 1.4425484179683559 1.5570247413781857 5 0.9809445800241965 1.3234867561409054 6 0.7406369878979567 1.1991175826469533 7 0.5704233919259993 1.0774583477730981 8 0.49685309949666384 1.0725637477545147 9 0.4096197996827123 0.9947835012816101 >10 5.173656363098347 35.02430133406515 >50 1.4198596032906856 24.831478932465128 >100 0.10203523931151162 4.136956064970479 >500 0.002354659368727191 0.4164912763919749 >1k 3.924432281211985E-4 0.12654642138022124 >5k 3.924432281211985E-4 0.9028743001571264 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8526 0.8958818436294248 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1195 0.1255663620850531 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07250275300308505 0.0 2 0.0 0.0 0.0 0.26826018611141467 0.0 3 0.0 0.0 0.0 0.409482939786989 0.0 4 0.0 0.0 0.0 0.64737603080001 0.0 5 0.0 0.0 0.0 1.2464168929312969 0.0 6 0.0 0.0 0.0 1.925841242087743 0.0 7 0.0 0.0 0.0 2.4164432040752852 0.0 8 0.0 0.0 0.0 3.4432503089247737 0.0 9 0.0 0.0 0.0 3.946356368894007 0.0 10 0.0 0.0 0.0 4.701120535301485 0.0 11 0.0 0.0 0.0 5.313401030589858 0.0 12 0.0 0.0 0.0 5.838678222274527 0.0 13 0.0 0.0 0.0 6.066694126646548 0.0 14 0.0 0.0 0.0 6.164520304973899 0.0 15 0.0 0.0 0.0 6.285988685367474 0.0 16 0.0 0.0 0.0 6.526298534813931 0.0 17 0.0 0.0 0.0 6.824715663116484 0.0 18 0.0 0.0 0.0 7.217596523230302 0.0 19 0.0 0.0 0.0 7.424702213330419 0.0 20 0.0 0.0 0.0 7.643681542690461 0.0 21 0.0 0.0 0.0 7.915514328225217 0.0 22 0.0 0.0 0.0 8.196068459411068 0.0 23 0.0 0.0 0.0 8.510457208665025 0.0 24 0.0 0.0 0.0 8.756441186607375 0.0 25 0.0 0.0 0.0 8.948310790931481 0.0 26 0.0 0.0 0.0 9.140915930430982 0.0 27 0.0 0.0 0.0 9.323223577474971 0.0 28 0.0 0.0 0.0 9.523919603903801 0.0 29 1.0507645362765948E-4 0.0 0.0 9.753406578626608 0.0 30 1.0507645362765948E-4 0.0 0.0 10.054030312455343 0.0 31 1.0507645362765948E-4 0.0 0.0 10.31136254738948 0.0 32 1.0507645362765948E-4 0.0 0.0 10.525298206975394 0.0 33 1.0507645362765948E-4 0.0 0.0 10.75310395844016 0.0 34 1.0507645362765948E-4 0.0 0.0 10.988580291019746 0.0 35 1.0507645362765948E-4 0.0 0.0 11.26713796958667 0.0 36 1.0507645362765948E-4 0.0 0.0 11.519636687653938 0.0 37 1.0507645362765948E-4 0.0 0.0 11.773816628979246 0.0 38 1.0507645362765948E-4 0.0 0.0 12.025369658963863 0.0 39 1.0507645362765948E-4 0.0 0.0 12.291002933734585 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGTTAG 75 0.0 45.000004 1 GTAAGCG 30 2.1651067E-6 45.000004 1 GCGTATT 25 3.8902974E-5 45.000004 13 CGCCCTT 25 3.8902974E-5 45.000004 45 TGCGTAA 25 3.8902974E-5 45.000004 13 ATTTCGC 30 2.1651067E-6 45.000004 35 AAGTATC 20 7.032675E-4 45.0 23 CGTATCA 20 7.032675E-4 45.0 43 TTTCGCG 20 7.032675E-4 45.0 1 ACGATTG 20 7.032675E-4 45.0 16 CCGTACT 20 7.032675E-4 45.0 20 ACGGCCA 20 7.032675E-4 45.0 30 TCCACCG 20 7.032675E-4 45.0 31 ACGTCGG 20 7.032675E-4 45.0 2 CCAACGG 20 7.032675E-4 45.0 2 TAATGCG 55 1.8189894E-12 45.0 1 TTTAGCG 65 0.0 44.999996 1 CGTTTTT 4550 0.0 43.615383 1 CGACGGT 80 0.0 42.1875 28 GACGGTC 80 0.0 42.1875 29 >>END_MODULE