SRR1547054_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547054_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	619293
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14028	2.265163662434421	No Hit
GAATCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGCCGTCTTC	2809	0.4535817456357492	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGCCG	1883	0.304056399797834	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGC	1382	0.22315769756803325	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGCCGTCTT	926	0.14952534583791516	No Hit
GAACTGTCTCTTATACACATCTGACGCACACGAGATCGTATGCCGTCTTCT	902	0.14564995890475108	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGCCGTCT	858	0.13854508286061687	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	674	0.10883378303969203	No Hit
GCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGCCGTCTTCTGC	626	0.10108300917336381	Illumina Single End Adapter 1 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATTC	45	3.8380676E-10	45.000004	9
GTTTGCG	35	1.2107193E-7	45.0	1
TCGTTGA	20	7.030764E-4	45.0	43
CGTTGAA	20	7.030764E-4	45.0	44
ATTACGG	35	1.2107193E-7	45.0	2
ATCGTCA	25	3.888714E-5	45.0	36
TACGACG	25	3.888714E-5	45.0	1
ATGCGAG	20	7.030764E-4	45.0	1
CGGAGAC	20	7.030764E-4	45.0	31
TGCCGTA	20	7.030764E-4	45.0	16
CGGACGG	35	1.2107193E-7	45.0	2
TCGTTAG	30	2.1638734E-6	44.999996	1
CGTTTTT	6925	0.0	44.350178	1
CGGGTAC	70	0.0	41.785713	6
CCGATCG	65	0.0	41.538464	40
AGTACGG	65	0.0	41.538464	2
CGATGAA	530	0.0	41.179245	19
GGCGCGA	265	0.0	40.75472	8
ACACCCG	50	1.0804797E-9	40.5	36
GCGTAAG	50	1.0804797E-9	40.5	1