##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547054_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 619293 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.563444120957286 31.0 31.0 33.0 30.0 34.0 2 31.91185270946063 31.0 31.0 34.0 30.0 34.0 3 31.832626882590308 31.0 31.0 34.0 30.0 34.0 4 35.6364418780771 37.0 35.0 37.0 33.0 37.0 5 35.590003439405905 37.0 35.0 37.0 33.0 37.0 6 35.674582144477654 37.0 35.0 37.0 33.0 37.0 7 36.02958373500104 37.0 35.0 37.0 35.0 37.0 8 35.96563339162561 37.0 35.0 37.0 35.0 37.0 9 37.75837446895088 39.0 38.0 39.0 35.0 39.0 10 37.318183799913776 39.0 37.0 39.0 34.0 39.0 11 36.979702660937555 39.0 37.0 39.0 33.0 39.0 12 36.31993741250103 38.0 35.0 39.0 32.0 39.0 13 35.993799380906935 38.0 35.0 39.0 31.0 39.0 14 37.072632824850274 39.0 35.0 41.0 32.0 41.0 15 37.28781691380332 39.0 35.0 41.0 32.0 41.0 16 37.44290182514577 39.0 35.0 41.0 33.0 41.0 17 37.374892013957854 39.0 35.0 41.0 32.0 41.0 18 37.20992002170217 39.0 35.0 41.0 32.0 41.0 19 37.02947231762671 38.0 35.0 41.0 32.0 41.0 20 36.64902719714255 38.0 35.0 41.0 32.0 41.0 21 36.61482044847915 38.0 35.0 40.0 32.0 41.0 22 36.5256930079946 37.0 35.0 40.0 32.0 41.0 23 36.43754894694434 37.0 35.0 40.0 32.0 41.0 24 36.35920961483498 37.0 35.0 40.0 31.0 41.0 25 36.30334268270431 37.0 35.0 40.0 31.0 41.0 26 36.11197607594467 37.0 35.0 40.0 31.0 41.0 27 36.003618642548844 37.0 35.0 40.0 31.0 41.0 28 36.03504318634314 37.0 35.0 40.0 31.0 41.0 29 35.99651538124926 37.0 35.0 40.0 31.0 41.0 30 35.964716216718095 37.0 35.0 40.0 31.0 41.0 31 35.74009394583824 37.0 35.0 40.0 30.0 41.0 32 35.356554974785766 37.0 35.0 40.0 29.0 41.0 33 35.02489451681191 37.0 34.0 40.0 25.0 41.0 34 34.66288493491772 37.0 34.0 40.0 23.0 41.0 35 34.43691273758948 37.0 34.0 40.0 23.0 41.0 36 34.291606719275045 36.0 34.0 40.0 21.0 41.0 37 34.15257882779234 36.0 34.0 40.0 21.0 41.0 38 34.08118289727157 36.0 34.0 40.0 21.0 41.0 39 33.99252050321899 36.0 34.0 40.0 20.0 41.0 40 33.88199446788515 36.0 33.0 40.0 19.0 41.0 41 33.83124950548448 36.0 33.0 40.0 18.0 41.0 42 33.73279045621378 36.0 33.0 40.0 18.0 41.0 43 33.60000193769346 35.0 33.0 40.0 18.0 41.0 44 33.421651786795586 35.0 33.0 40.0 18.0 41.0 45 33.39135433470102 35.0 33.0 40.0 18.0 41.0 46 33.35845875861668 35.0 33.0 40.0 18.0 41.0 47 33.26366356474237 35.0 33.0 40.0 18.0 41.0 48 33.22021563298794 35.0 33.0 40.0 18.0 41.0 49 33.1543938006727 35.0 33.0 40.0 18.0 41.0 50 33.02341218130998 35.0 33.0 40.0 17.0 41.0 51 32.65233096450307 35.0 32.0 39.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 2.0 12 1.0 13 2.0 14 4.0 15 17.0 16 46.0 17 120.0 18 336.0 19 649.0 20 1173.0 21 2103.0 22 3273.0 23 4847.0 24 7186.0 25 11024.0 26 15032.0 27 16041.0 28 14738.0 29 13882.0 30 15371.0 31 17565.0 32 21837.0 33 28489.0 34 49962.0 35 91985.0 36 42001.0 37 48834.0 38 70568.0 39 142106.0 40 97.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.396447239029023 22.174964031565025 26.630367209059365 19.79822152034659 2 36.3117296659255 24.995276872175207 26.971562733633352 11.721430728265942 3 25.793122157040365 24.869003847936273 37.34322848796934 11.994645507054011 4 22.909349855399626 24.594820222414914 39.564955521861215 12.93087440032424 5 23.148816472978055 29.091237911618574 35.07903367226822 12.680911943135156 6 19.094677317521754 39.13769411247988 31.86520758348633 9.90242098651204 7 78.88786083485523 3.2147949355151764 15.880528279828773 2.0168159498008214 8 79.3971512676552 3.9254440143841447 14.069753735307843 2.607650982652799 9 75.47784328258192 3.8329191513548513 15.798660730865679 4.890576835197556 10 47.05058833217879 20.84037765645664 21.095991719589918 11.013042291774653 11 38.51843957545136 20.158955454041948 28.20393577837954 13.118669192127152 12 33.15764912569656 19.65031091906416 30.6916112405598 16.500428714679483 13 20.56005800162443 32.60879745128719 32.790456213779265 14.040688333309111 14 15.038438994143322 36.18626401396431 33.78287821758037 14.992418774311997 15 13.588721332228848 23.12895511494559 47.986817225449016 15.29550632737654 16 15.240766486945597 20.99103332348339 45.69807829250452 18.070121897066493 17 16.043133056566116 22.195794236330784 34.11115578571048 27.64991692139262 18 19.935797756473914 24.137201615390453 36.46238533295225 19.46461529518338 19 23.745949009596426 26.862406001682565 29.882462743806244 19.509182244914765 20 26.40381854792481 25.145932539201958 29.89150531331696 18.55874359955627 21 19.516610069869998 29.302446499476016 32.312491825355686 18.8684516052983 22 19.587658830311337 24.251041106552147 32.81645360112257 23.34484646201394 23 17.97646671284836 29.33554876286346 31.1666690887835 21.521315435504683 24 18.70826894539418 25.644565657935743 38.697030323288004 16.950135073382068 25 16.408226800561284 27.97884038734492 36.61417132116785 18.998761490925943 26 15.65188045077209 32.24031274372551 32.9214119972291 19.186394808273306 27 18.257755214413855 29.549340942009678 33.24759039743708 18.945313446139387 28 15.489114199579198 27.844978063695216 39.90162976167985 16.764277975045736 29 15.937367288181846 24.994469499897466 38.858181829925414 20.209981381995277 30 18.20123915497188 29.09204528389631 33.624310302231734 19.082405258900067 31 24.754518458952386 26.468569804599763 28.234454450478207 20.542457285969647 32 25.07795179341604 28.389954351171415 28.089288914940102 18.442804940472442 33 23.865117157791225 28.038101512531227 27.13610520383728 20.960676125840273 34 18.212380892404724 29.79720423127663 29.561774475086917 22.42864040123173 35 19.887355419809364 27.90714572908139 30.428084929104642 21.77741392200461 36 25.887261764625148 28.30324256854187 27.056175348340773 18.753320318492218 37 19.560692596234738 31.098203919630933 29.93800995651493 19.403093527619397 38 20.64127965276533 32.33429087685474 26.196323872544987 20.828105597834952 39 19.722005577327696 31.886037788252086 28.10688963059489 20.28506700382533 40 22.55023066625975 27.718866513911834 27.52089883140936 22.210003988419054 41 17.679353714639113 27.02678699743094 28.689489466213892 26.604369821716055 42 21.25116867137203 28.12626656526071 26.81412513947356 23.808439623893698 43 21.095507296223275 29.01437607077748 27.22023339517805 22.669883237821193 44 19.455572725672663 31.483643445025216 28.54061001819817 20.520173811103952 45 17.726988679025922 33.89558738755323 25.965253926655073 22.41217000676578 46 22.367280108123293 31.23481130902497 26.833017650772735 19.564890932079 47 20.173165206130218 28.11076501752805 29.0876854735965 22.62838430274523 48 22.031574715037955 25.52781962657417 30.311015948831976 22.129589709555898 49 20.164607059986146 24.751288969841415 31.56970932983257 23.514394640339873 50 18.384189713108334 29.512040342777972 30.389008110861905 21.71476183325179 51 17.486876163625293 31.755566428168898 27.29984030176346 23.457717106442345 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 532.0 1 623.5 2 715.0 3 9542.0 4 18369.0 5 12026.5 6 5684.0 7 5824.0 8 5964.0 9 6356.0 10 6748.0 11 6988.5 12 7229.0 13 7240.0 14 7251.0 15 7072.5 16 6894.0 17 6408.5 18 5923.0 19 5774.5 20 5626.0 21 5062.0 22 4498.0 23 4460.0 24 4422.0 25 4263.5 26 4583.5 27 5062.0 28 5603.0 29 6144.0 30 6869.5 31 7595.0 32 8972.5 33 10350.0 34 11682.5 35 13015.0 36 14160.0 37 15305.0 38 18238.0 39 21171.0 40 27960.5 41 34750.0 42 41512.0 43 48274.0 44 51773.5 45 55273.0 46 60315.0 47 65357.0 48 60032.0 49 54707.0 50 51092.0 51 47477.0 52 42242.0 53 37007.0 54 33192.5 55 29378.0 56 26015.0 57 22652.0 58 19957.5 59 17263.0 60 16029.5 61 14796.0 62 12377.0 63 9958.0 64 8455.5 65 6953.0 66 5725.0 67 4497.0 68 3796.5 69 3096.0 70 2658.5 71 2221.0 72 1982.0 73 1743.0 74 1210.5 75 489.5 76 301.0 77 228.0 78 155.0 79 134.5 80 114.0 81 64.5 82 15.0 83 15.5 84 16.0 85 10.0 86 4.0 87 3.5 88 3.0 89 2.0 90 1.0 91 0.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 619293.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.25678827101649 #Duplication Level Percentage of deduplicated Percentage of total 1 76.4725076545906 28.491200262407695 2 8.118245058873978 6.049194745813871 3 3.64716547344592 4.076450155006087 4 2.069591098944495 3.084252695238215 5 1.4192111415044881 2.6437624505450166 6 0.992486463113959 2.2186114810852073 7 0.806254825142514 2.1026925718974043 8 0.6354172679496513 1.8938885292598326 9 0.5670371761313038 1.9013385611627158 >10 5.103670121219535 38.69699955086262 >50 0.14404377524154383 3.367019860570412 >100 0.020018168155917594 1.4736285215446427 >500 0.0026110654116414255 0.7417593229251557 >1k 0.0013055327058207127 0.9847969677480646 >5k 0.0 0.0 >10k+ 4.351775686069042E-4 2.2744043239331333 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14028 2.265163662434421 No Hit GAATCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGCCGTCTTC 2809 0.4535817456357492 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGCCG 1883 0.304056399797834 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGC 1382 0.22315769756803325 No Hit CGTTTCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGCCGTCTT 926 0.14952534583791516 No Hit GAACTGTCTCTTATACACATCTGACGCACACGAGATCGTATGCCGTCTTCT 902 0.14564995890475108 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGCCGTCT 858 0.13854508286061687 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 674 0.10883378303969203 No Hit GCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGCCGTCTTCTGC 626 0.10108300917336381 Illumina Single End Adapter 1 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06006849746404368 0.0 2 0.0 0.0 0.0 0.2475403403558574 0.0 3 0.0 0.0 0.0 0.41014511709320145 0.0 4 0.0 0.0 0.0 0.7579610943446802 0.0 5 0.0 0.0 0.0 1.6958047321703944 0.0 6 0.0 0.0 0.0 2.7011446924153835 0.0 7 0.0 0.0 0.0 3.546301992756256 0.0 8 0.0 0.0 0.0 4.969537843960775 0.0 9 0.0 0.0 0.0 5.82955079421211 0.0 10 0.0 0.0 0.0 6.916435354509093 0.0 11 0.0 0.0 0.0 7.457859203963229 0.0 12 0.0 0.0 0.0 8.1465477568776 0.0 13 0.0 0.0 0.0 8.431550170920712 0.0 14 0.0 0.0 0.0 8.592217254191473 0.0 15 0.0 0.0 0.0 8.75772857112869 0.0 16 0.0 0.0 0.0 8.97168222473046 0.0 17 0.0 0.0 0.0 9.212763586864376 0.0 18 0.0 0.0 0.0 9.556542702727143 0.0 19 0.0 0.0 0.0 9.775340589995366 0.0 20 0.0 0.0 0.0 9.975407440419962 0.0 21 0.0 0.0 0.0 10.192590583132702 0.0 22 0.0 0.0 0.0 10.417847448622865 0.0 23 0.0 0.0 0.0 10.688963059488804 0.0 24 0.0 0.0 0.0 10.89678068377973 0.0 25 0.0 0.0 0.0 11.080054190827282 0.0 26 0.0 0.0 0.0 11.250409741430955 0.0 27 0.0 0.0 0.0 11.434813569667346 0.0 28 0.0 0.0 0.0 11.619378872359286 0.0 29 0.0 0.0 0.0 11.820414569517176 0.0 30 0.0 0.0 0.0 12.109938268315643 0.0 31 0.0 0.0 0.0 12.334064812616967 0.0 32 0.0 0.0 0.0 12.557868408007195 0.0 33 0.0 0.0 0.0 12.790230149541493 0.0 34 0.0 0.0 0.0 13.021138620975854 0.0 35 0.0 0.0 0.0 13.266256844498484 0.0 36 0.0 0.0 0.0 13.5020095495993 0.0 37 0.0 0.0 0.0 13.747289247577479 0.0 38 0.0 0.0 0.0 14.012914726954769 0.0 39 0.0 0.0 0.0 14.282254118809675 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGATTC 45 3.8380676E-10 45.000004 9 GTTTGCG 35 1.2107193E-7 45.0 1 TCGTTGA 20 7.030764E-4 45.0 43 CGTTGAA 20 7.030764E-4 45.0 44 ATTACGG 35 1.2107193E-7 45.0 2 ATCGTCA 25 3.888714E-5 45.0 36 TACGACG 25 3.888714E-5 45.0 1 ATGCGAG 20 7.030764E-4 45.0 1 CGGAGAC 20 7.030764E-4 45.0 31 TGCCGTA 20 7.030764E-4 45.0 16 CGGACGG 35 1.2107193E-7 45.0 2 TCGTTAG 30 2.1638734E-6 44.999996 1 CGTTTTT 6925 0.0 44.350178 1 CGGGTAC 70 0.0 41.785713 6 CCGATCG 65 0.0 41.538464 40 AGTACGG 65 0.0 41.538464 2 CGATGAA 530 0.0 41.179245 19 GGCGCGA 265 0.0 40.75472 8 ACACCCG 50 1.0804797E-9 40.5 36 GCGTAAG 50 1.0804797E-9 40.5 1 >>END_MODULE