SRR1547050_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547050_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2280910
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	49698	2.1788672065096826	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTT	3469	0.1520884208495732	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCT	3160	0.13854119627692457	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTC	2320	0.10171378967166614	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTACG	20	7.034748E-4	45.000004	1
GCGTATA	20	7.034748E-4	45.000004	18
ACGTTAT	35	1.2126293E-7	45.0	41
CCTCGCG	25	3.892018E-5	45.0	34
CGTTTTT	20750	0.0	44.13253	1
TATTGCG	210	0.0	41.785713	1
TATAGCG	200	0.0	41.625	1
ATAACGG	155	0.0	40.64516	2
GATTACG	100	0.0	40.5	1
CACGACC	420	0.0	40.17857	27
TAGGGCG	460	0.0	40.108692	5
TACGGGT	320	0.0	40.07813	4
TGCGTTG	80	0.0	39.375004	1
AAACACG	430	0.0	38.72093	40
TGCGACA	35	6.2509953E-6	38.571426	30
CGGGATC	635	0.0	38.267715	6
ATTGCGG	590	0.0	38.135593	2
AGGGCGC	325	0.0	38.076923	6
ATAGGGC	1095	0.0	38.0137	4
CTAGCGG	160	0.0	37.968754	2