SRR1547044_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547044_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1143440
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4420	0.38655285804239836	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2757	0.24111453158888965	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2534	0.22161197789127546	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2279	0.19931085146575248	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2140	0.18715455117889876	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1683	0.1471874344084517	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1452	0.1269852375288603	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1144	0.10004897502273839	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGCA	30	2.1654923E-6	45.000004	26
GGTGTAT	60	0.0	45.000004	38
TTTCGAT	30	2.1654923E-6	45.000004	37
GACAATC	30	2.1654923E-6	45.000004	33
TAGCGAT	30	2.1654923E-6	45.000004	38
TAACGTT	30	2.1654923E-6	45.000004	28
CCGTATT	60	0.0	45.000004	26
TAACCGT	30	2.1654923E-6	45.000004	42
CCATCGG	30	2.1654923E-6	45.000004	42
GTTCGCG	30	2.1654923E-6	45.000004	1
CTACGTC	30	2.1654923E-6	45.000004	30
AGCGATC	30	2.1654923E-6	45.000004	39
GCGATAT	30	2.1654923E-6	45.000004	9
CATCGGT	30	2.1654923E-6	45.000004	43
ACGTATG	30	2.1654923E-6	45.000004	1
CGGTCTA	125	0.0	45.000004	31
ATCGGTC	30	2.1654923E-6	45.000004	44
CGACTTG	30	2.1654923E-6	45.000004	19
CGCAATA	30	2.1654923E-6	45.000004	25
ACTCAAT	30	2.1654923E-6	45.000004	10