SRR1547042_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547042_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1299727
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6053	0.46571318438410525	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1432	0.11017698332034342	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	25	3.8910875E-5	45.000004	1
AGCCGAA	25	3.8910875E-5	45.000004	42
GCCTTCG	25	3.8910875E-5	45.000004	9
ACACGGC	30	2.1657215E-6	45.000004	27
ACGCCGT	25	3.8910875E-5	45.000004	43
GTCGATA	30	2.1657215E-6	45.000004	16
CGTATCC	35	1.2120836E-7	45.000004	12
CGAGTAC	25	3.8910875E-5	45.000004	20
TTTCGCG	50	2.1827873E-11	45.000004	1
ATCAGTC	30	2.1657215E-6	45.000004	13
CGTGAAT	25	3.8910875E-5	45.000004	35
TTATCGG	35	1.2120836E-7	45.000004	1
TCGATAC	30	2.1657215E-6	45.000004	17
GACCCGT	30	2.1657215E-6	45.000004	22
CGTTAGA	30	2.1657215E-6	45.000004	20
ACGATTT	35	1.2120836E-7	45.000004	17
AGACGAT	30	2.1657215E-6	45.000004	39
CTACGTA	25	3.8910875E-5	45.000004	42
TATTCGA	25	3.8910875E-5	45.000004	36
TATTACG	70	0.0	45.000004	1