##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547041_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1495123 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.434328814418613 31.0 31.0 33.0 30.0 34.0 2 31.85155669466659 31.0 31.0 34.0 30.0 34.0 3 31.990408147022016 33.0 31.0 34.0 30.0 34.0 4 35.714262304840474 37.0 35.0 37.0 33.0 37.0 5 35.613483305386914 37.0 35.0 37.0 33.0 37.0 6 35.68179674849494 37.0 35.0 37.0 33.0 37.0 7 36.028933405479016 37.0 35.0 37.0 35.0 37.0 8 36.02705396144665 37.0 35.0 37.0 35.0 37.0 9 37.84554648681078 39.0 38.0 39.0 35.0 39.0 10 37.20290638295311 39.0 37.0 39.0 33.0 39.0 11 36.92854634702295 39.0 37.0 39.0 33.0 39.0 12 36.27394602317 38.0 35.0 39.0 32.0 39.0 13 35.998606134746105 38.0 35.0 39.0 32.0 39.0 14 36.91821007368625 39.0 35.0 41.0 31.0 41.0 15 37.200762746610145 39.0 35.0 41.0 32.0 41.0 16 37.31883463768533 39.0 35.0 41.0 32.0 41.0 17 37.28435051831856 39.0 35.0 41.0 32.0 41.0 18 37.20773675476867 39.0 35.0 41.0 32.0 41.0 19 37.18859384813156 39.0 35.0 41.0 32.0 41.0 20 37.05029552752516 39.0 35.0 41.0 32.0 41.0 21 36.93163037422339 39.0 35.0 41.0 32.0 41.0 22 36.86557427047808 38.0 35.0 41.0 32.0 41.0 23 36.83833437115207 38.0 35.0 41.0 32.0 41.0 24 36.77841622394947 38.0 35.0 41.0 31.0 41.0 25 36.71885724452102 38.0 35.0 41.0 31.0 41.0 26 36.60255042561716 38.0 35.0 41.0 31.0 41.0 27 36.512729053061186 38.0 35.0 40.0 31.0 41.0 28 36.49632973340655 38.0 35.0 40.0 31.0 41.0 29 36.54059431899583 38.0 35.0 40.0 31.0 41.0 30 36.53036572910724 38.0 35.0 40.0 31.0 41.0 31 36.414543151299256 38.0 35.0 40.0 31.0 41.0 32 36.35223857836446 38.0 35.0 41.0 30.0 41.0 33 36.264348150620386 38.0 35.0 41.0 30.0 41.0 34 36.17205273412288 38.0 35.0 41.0 30.0 41.0 35 36.11729937938217 38.0 35.0 41.0 30.0 41.0 36 36.036584949867 38.0 35.0 41.0 30.0 41.0 37 36.01295144279099 38.0 35.0 41.0 30.0 41.0 38 35.96242850922633 38.0 35.0 41.0 30.0 41.0 39 35.8961557009022 38.0 35.0 41.0 30.0 41.0 40 35.76219080303092 38.0 35.0 40.0 29.0 41.0 41 35.743447863486814 38.0 35.0 40.0 29.0 41.0 42 35.71182103412227 38.0 35.0 40.0 29.0 41.0 43 35.62944520283615 38.0 35.0 40.0 29.0 41.0 44 35.50678773585852 38.0 34.0 40.0 29.0 41.0 45 35.40916299194113 37.0 34.0 40.0 28.0 41.0 46 35.402555508810984 37.0 34.0 40.0 28.0 41.0 47 35.39192360762292 37.0 34.0 40.0 28.0 41.0 48 35.32203638095327 37.0 34.0 40.0 28.0 41.0 49 35.25205417882007 37.0 34.0 40.0 28.0 41.0 50 35.171137759234526 37.0 34.0 40.0 28.0 41.0 51 34.815076084041245 36.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 4.0 11 4.0 12 6.0 13 12.0 14 16.0 15 48.0 16 94.0 17 249.0 18 490.0 19 951.0 20 1622.0 21 2751.0 22 4160.0 23 6167.0 24 9243.0 25 12961.0 26 17419.0 27 21564.0 28 24423.0 29 28478.0 30 33909.0 31 41488.0 32 53132.0 33 70175.0 34 124127.0 35 192525.0 36 99063.0 37 131430.0 38 204596.0 39 413724.0 40 290.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.71414927066201 23.649224846383877 29.843698478319176 12.792927404634934 2 30.62196220645392 25.476031069015725 31.068413769301923 12.833592955228431 3 29.33190112117866 25.317181262009882 31.71397938497368 13.636938231837782 4 26.86942813400637 27.2119417599756 31.435875175487233 14.4827549305308 5 24.01849212405936 32.45238017206611 29.391896185129916 14.137231518744612 6 21.851446335853307 42.41523941508491 25.4628548955504 10.270459353511384 7 88.76982027565626 3.8502517853046205 5.580544209406183 1.7993837296329467 8 90.300731110417 2.727467907322675 5.345245842649735 1.6265551396105873 9 86.88823595115586 4.334693533575498 6.4492352803080415 2.327835234960602 10 45.25005634987891 28.105848147610597 13.833711340137233 12.810384162373262 11 38.77072321140134 25.80356265002946 21.033119014288456 14.392595124280744 12 36.135020329431086 22.85651414632776 24.88123050745658 16.12723501678457 13 24.954736165519492 31.277226020869186 26.121329148170418 17.6467086654409 14 17.31135164130309 33.99546391835321 29.530613869226812 19.16257057111689 15 17.389940493190192 27.405504430070305 38.62565153502421 16.5789035417153 16 21.580900032973876 24.394916003566262 37.01695445792754 17.00722950553232 17 22.97208992169875 24.143832982303127 26.78756195978525 26.096515136212872 18 24.07387218309129 26.77070715921031 30.928759707395308 18.226660950303085 19 27.780122438087034 27.902319742255322 25.303804436156756 19.01375338350089 20 29.230571665341248 27.546763711079294 25.909774647303262 17.3128899762762 21 25.887836652904145 27.286316911718966 29.585927044129477 17.239919391247412 22 23.791353621073316 22.42083092829152 29.66839517551399 24.11942027512118 23 20.767923441750277 27.294944964394237 30.155311636567696 21.781819957287794 24 20.46908515219149 25.623711226434214 34.71694302074144 19.190260600632858 25 20.852063676366424 27.261636668019957 31.90386342795877 19.982436227654848 26 19.33098480860772 32.8420471091676 26.70281976800571 21.124148314218964 27 18.560880944243383 31.785010330253765 30.979257224990853 18.674851500512 28 16.311099488135756 29.17846892864333 34.465926883607565 20.044504699613345 29 17.79485701176425 27.557598940020316 34.52291216174188 20.124631886473555 30 20.872864640568032 28.887589850467155 31.04079062391522 19.198754885049592 31 27.227458877965223 26.457488781859418 26.935108348945203 19.379943991230153 32 28.52889026521564 26.432340349255547 27.167129393367635 17.87163999216118 33 27.320093396998107 26.64971376936881 26.29623114620001 19.733961687433073 34 19.90886368546267 27.463693622531387 29.517638348149283 23.10980434385666 35 20.126103337317396 27.897972273853057 30.897257282511205 21.078667106318346 36 27.177095128628213 26.983599342662778 27.200303921483382 18.639001607225627 37 21.00195101005068 32.13688773432018 27.677990372698435 19.183170882930703 38 21.973978060667918 31.856175043792383 25.52525778815522 20.644589107384476 39 21.471477597495323 29.055469014923858 27.884729216258464 21.58832417132236 40 24.293987852504443 27.0226596741539 27.236755771933147 21.446596701408513 41 19.751685981688464 25.036201034965018 28.70238769653065 26.509725286815865 42 21.738412157394407 25.534688450381676 27.63177343937589 25.095125952848026 43 21.770115234666314 24.891463779234215 27.879779790692805 25.458641195406667 44 20.633887646701975 27.668359058084185 29.79935430061607 21.898398994597766 45 19.873348212822624 32.59718431192618 25.544587301512983 21.984880173738215 46 21.82161601420084 30.59152992763806 27.16672808859204 20.420125969569057 47 20.993322957375412 28.296401031888347 28.450970254621193 22.25930575611505 48 21.640360023891013 27.190003765576478 30.844017515615775 20.325618694916738 49 22.112628860635546 25.82884485089187 30.863213260715007 21.19531302775758 50 20.02410504018733 30.623768077944092 28.57544161918451 20.776685262684076 51 19.01589367563739 30.855053396944598 28.30904213231955 21.82001079509846 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 796.0 1 1787.5 2 2779.0 3 6239.0 4 9699.0 5 7068.0 6 4437.0 7 4489.5 8 4542.0 9 4722.0 10 4902.0 11 4775.0 12 4648.0 13 4783.0 14 4918.0 15 4636.0 16 4354.0 17 4443.0 18 4532.0 19 4650.5 20 4769.0 21 5113.5 22 5458.0 23 6770.5 24 8083.0 25 9193.5 26 12569.5 27 14835.0 28 17218.0 29 19601.0 30 22614.5 31 25628.0 32 30817.5 33 36007.0 34 41244.5 35 46482.0 36 52498.0 37 58514.0 38 63293.0 39 68072.0 40 85820.0 41 103568.0 42 116701.5 43 129835.0 44 132831.0 45 135827.0 46 134522.0 47 133217.0 48 131079.5 49 128942.0 50 119021.0 51 109100.0 52 100016.0 53 90932.0 54 83233.0 55 75534.0 56 71478.0 57 67422.0 58 59449.5 59 51477.0 60 46072.5 61 40668.0 62 35322.0 63 29976.0 64 25203.5 65 20431.0 66 16765.0 67 13099.0 68 10425.0 69 7751.0 70 6695.5 71 5640.0 72 4807.0 73 3974.0 74 3196.0 75 1645.0 76 872.0 77 766.0 78 660.0 79 494.5 80 329.0 81 185.5 82 42.0 83 31.5 84 21.0 85 16.0 86 11.0 87 9.0 88 7.0 89 6.5 90 6.0 91 4.5 92 3.0 93 2.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1495123.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.544851684600925 #Duplication Level Percentage of deduplicated Percentage of total 1 80.68099796895642 14.96217141099885 2 6.703828203075317 2.48642999490153 3 2.049844093161848 1.1404216405272523 4 1.0560651491071789 0.7833828623787435 5 0.7042876796265937 0.6530455280983456 6 0.4936933954719481 0.5493282478016585 7 0.41717190562526013 0.5415473781761948 8 0.3340686172643071 0.4956202367717029 9 0.25981372042927975 0.4336386219886826 >10 4.20818144909878 19.496148330677983 >50 1.8495578837322266 24.547058444698337 >100 1.2388547971353767 33.114654321699035 >500 0.002544596120876652 0.2914941681670668 >1k 7.270274631076149E-4 0.16516205180603924 >5k 3.6351373155380743E-4 0.33989676130859175 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5042 0.3372297797572507 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.023075024596638537 0.0 2 0.0 0.0 0.0 0.08955784908666377 0.0 3 0.0 0.0 0.0 0.13457086808242533 0.0 4 0.0 0.0 0.0 0.2174403042425272 0.0 5 0.0 0.0 0.0 0.3936799848574331 0.0 6 0.0 0.0 0.0 0.5607565397629493 0.0 7 0.0 0.0 0.0 0.661550922566237 0.0 8 0.0 0.0 0.0 0.8590597562876098 0.0 9 0.0 0.0 0.0 0.9228003314777447 0.0 10 0.0 0.0 0.0 1.0546958343895452 0.0 11 0.0 0.0 0.0 1.26270547640562 0.0 12 0.0 0.0 0.0 1.4211539786358713 0.0 13 0.0 0.0 0.0 1.4818178838797877 0.0 14 0.0 0.0 0.0 1.509374145137223 0.0 15 0.0 0.0 0.0 1.5549222371671094 0.0 16 0.0 0.0 0.0 1.6552484310655378 0.0 17 0.0 0.0 0.0 1.7710917429535897 0.0 18 0.0 0.0 0.0 1.9187050162428108 0.0 19 0.0 0.0 0.0 2.013479827412193 0.0 20 0.0 0.0 0.0 2.125310091544308 0.0 21 0.0 0.0 0.0 2.280481271440544 0.0 22 0.0 0.0 0.0 2.427626355824905 0.0 23 0.0 0.0 0.0 2.580590359455376 0.0 24 0.0 0.0 0.0 2.6997778778067087 0.0 25 0.0 0.0 0.0 2.801909943195309 0.0 26 0.0 0.0 0.0 2.9081888245983776 0.0 27 0.0 0.0 0.0 3.0238314840986327 0.0 28 0.0 0.0 0.0 3.1464300930425124 0.0 29 0.0 0.0 0.0 3.2909666963855146 0.0 30 0.0 0.0 0.0 3.443261858723329 0.0 31 0.0 0.0 0.0 3.5825814999836134 0.0 32 0.0 0.0 0.0 3.704043078729977 0.0 33 0.0 0.0 0.0 3.8349353197027938 0.0 34 0.0 0.0 0.0 3.981679099311562 0.0 35 0.0 0.0 0.0 4.153236890877874 0.0 36 0.0 0.0 0.0 4.291352617811377 0.0 37 0.0 0.0 0.0 4.447995248551457 0.0 38 0.0 0.0 0.0 4.663094608269687 0.0 39 0.0 0.0 0.0 5.053764807310168 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGATA 25 3.8913702E-5 45.000004 11 TCGATCA 50 2.1827873E-11 45.000004 17 CTAACCG 25 3.8913702E-5 45.000004 18 TTAAGCG 25 3.8913702E-5 45.000004 1 TACAGCG 65 0.0 45.000004 1 CGAACTA 40 6.8175723E-9 45.0 33 CCGATTA 20 7.033968E-4 45.0 10 ACCGCTA 20 7.033968E-4 45.0 17 CTACGCG 35 1.2122655E-7 45.0 1 CATACGT 20 7.033968E-4 45.0 11 CGCAATA 20 7.033968E-4 45.0 14 TATCGCG 75 0.0 45.0 1 TACGTTC 20 7.033968E-4 45.0 31 ATCGATA 20 7.033968E-4 45.0 36 GTTTACG 55 1.8189894E-12 44.999996 1 CGGTCTA 380 0.0 44.407894 31 CGACGGT 390 0.0 43.846153 28 GCGATAT 135 0.0 43.333336 9 AATAGCG 135 0.0 43.333336 1 TCACGAC 415 0.0 42.831326 25 >>END_MODULE