##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547040_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1311746 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.42119434707634 31.0 31.0 33.0 30.0 34.0 2 31.82936940535744 31.0 31.0 34.0 30.0 34.0 3 31.951652225354604 33.0 31.0 34.0 30.0 34.0 4 35.70006540900449 37.0 35.0 37.0 33.0 37.0 5 35.604816023833884 37.0 35.0 37.0 33.0 37.0 6 35.66463858094479 37.0 35.0 37.0 33.0 37.0 7 36.00551097544799 37.0 35.0 37.0 35.0 37.0 8 35.991043235504435 37.0 35.0 37.0 35.0 37.0 9 37.771197320212906 39.0 38.0 39.0 35.0 39.0 10 37.19714258705572 39.0 37.0 39.0 33.0 39.0 11 36.90182169413896 39.0 37.0 39.0 33.0 39.0 12 36.33120360191683 38.0 35.0 39.0 32.0 39.0 13 36.12042346612835 38.0 35.0 39.0 32.0 39.0 14 37.07906103773139 39.0 35.0 41.0 31.0 41.0 15 37.3347279122635 39.0 35.0 41.0 32.0 41.0 16 37.417489361507485 39.0 35.0 41.0 32.0 41.0 17 37.34509196140107 39.0 35.0 41.0 32.0 41.0 18 37.25396532560419 39.0 35.0 41.0 32.0 41.0 19 37.21859186153417 39.0 35.0 41.0 32.0 41.0 20 37.06527940622651 39.0 35.0 41.0 32.0 41.0 21 36.96319409397856 39.0 35.0 41.0 32.0 41.0 22 36.882927030080516 39.0 35.0 41.0 31.0 41.0 23 36.840936431290814 38.0 35.0 41.0 31.0 41.0 24 36.76110314039456 38.0 35.0 41.0 31.0 41.0 25 36.70873400795581 38.0 35.0 41.0 31.0 41.0 26 36.58683769571243 38.0 35.0 41.0 31.0 41.0 27 36.4736275163027 38.0 35.0 40.0 31.0 41.0 28 36.414208238485195 38.0 35.0 40.0 31.0 41.0 29 36.45151500366687 38.0 35.0 40.0 31.0 41.0 30 36.42469731182714 38.0 35.0 40.0 31.0 41.0 31 36.32237338631107 38.0 35.0 40.0 30.0 41.0 32 36.23766110207311 38.0 35.0 41.0 30.0 41.0 33 36.138365201799736 38.0 35.0 41.0 30.0 41.0 34 36.01408046984706 38.0 35.0 41.0 30.0 41.0 35 35.94254375465982 38.0 35.0 41.0 30.0 41.0 36 35.835526085080495 38.0 35.0 41.0 29.0 41.0 37 35.810441960562486 38.0 35.0 41.0 29.0 41.0 38 35.75369774331311 38.0 35.0 41.0 29.0 41.0 39 35.685890408661436 38.0 35.0 40.0 29.0 41.0 40 35.55317264165471 38.0 35.0 40.0 28.0 41.0 41 35.504479525761845 38.0 34.0 40.0 28.0 41.0 42 35.47150439185635 38.0 34.0 40.0 28.0 41.0 43 35.39283748530585 38.0 34.0 40.0 27.0 41.0 44 35.25278293206154 38.0 34.0 40.0 27.0 41.0 45 35.170744946049005 37.0 34.0 40.0 27.0 41.0 46 35.15895302901629 37.0 34.0 40.0 27.0 41.0 47 35.143083340829705 37.0 34.0 40.0 27.0 41.0 48 35.06006269506444 37.0 34.0 40.0 27.0 41.0 49 35.00397866660161 37.0 34.0 40.0 27.0 41.0 50 34.93547531305603 37.0 34.0 40.0 27.0 41.0 51 34.570461811966645 36.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 4.0 11 4.0 12 2.0 13 6.0 14 19.0 15 45.0 16 109.0 17 246.0 18 566.0 19 1065.0 20 1808.0 21 2768.0 22 4192.0 23 6315.0 24 8998.0 25 13122.0 26 17641.0 27 20724.0 28 22969.0 29 25749.0 30 30273.0 31 37051.0 32 46513.0 33 60835.0 34 105359.0 35 155201.0 36 90345.0 37 118148.0 38 182301.0 39 359096.0 40 270.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.235896278700295 23.214021616989875 28.994561447109422 13.555520657200404 2 32.161409297226754 24.9287590737841 29.473846308660367 13.435985320328783 3 30.16208930692375 24.432397735537215 31.998725362989482 13.406787594549554 4 27.178279941391093 27.434427091830276 30.493555917075412 14.89373704970322 5 23.893345205550464 31.321307631202995 29.816443122372778 14.968904040873769 6 22.410817338112714 41.01838313210027 26.474790088934903 10.096009440852116 7 86.45599071771517 4.269576579612211 7.2292196812492655 2.045213021423355 8 87.03377025735165 3.6437694492683796 7.23966377637134 2.082796517008628 9 82.9900758226059 5.423839676278792 8.58565606451249 3.0004284366028178 10 44.93987403049066 29.63195618663979 14.005760261514045 11.422409521355506 11 36.3388948775144 24.384980018997577 24.328795361297082 14.947329742190943 12 34.52817847357644 21.918572650497886 27.143745816644383 16.409503059281295 13 24.466703157471034 29.428410683165794 27.92804399632246 18.17684216304071 14 17.49111489571914 32.5047684536488 31.12950220545746 18.8746144451746 15 17.428755262070553 27.56097598163059 38.43419381496113 16.57607494133773 16 22.935842762242082 24.15566733193774 36.403007899395156 16.505482006425023 17 22.447790959530277 24.531959693416255 27.899074973356125 25.121174373697347 18 23.756275986357114 26.851616090310166 31.528359911141337 17.863748012191387 19 27.075744846944456 27.420933625869644 26.881347455986145 18.62197407119976 20 27.992233252474186 27.121028003897095 27.424211699521095 17.462527044107627 21 25.805376955599634 27.209993398112136 30.10575218068132 16.87887746560691 22 23.839828747333705 22.647448515185104 30.63466555262985 22.878057184851336 23 21.509270849691937 26.446049768781453 30.72187755861272 21.32280182291389 24 20.42331365980914 25.88748126542791 34.52398558867342 19.165219486089534 25 21.545253425586967 26.82897451183385 31.443663636100283 20.182108426478905 26 19.57314907001813 31.894894285936452 27.35491474721478 21.177041896830637 27 18.273659687165043 31.399371524670173 31.157937588527044 19.169031199637736 28 17.280098433690668 28.34230102474107 35.1259313922055 19.25166914936276 29 18.629063858399416 28.173442114555712 33.49070628002677 19.706787747018094 30 20.79777639878452 28.880819914831076 31.557252699836706 18.7641509865477 31 26.373398508552725 26.482032344676487 28.193186790735403 18.95138235603539 32 27.008125048599346 27.407440159909008 27.234693301904482 18.34974148958716 33 26.290455621743842 27.164786475430457 26.970846490097934 19.573911412727767 34 21.036694603985833 26.901702006333544 29.711392296984325 22.3502110926963 35 20.976393295653274 28.216209540566545 30.34306946619239 20.464327697587795 36 26.98815166960677 27.31611150329408 27.018111738095634 18.67762508900351 37 21.786001253291413 30.886543583895055 28.243348941029744 19.084106221783788 38 21.58077859585621 31.064093200970312 26.592724506116276 20.762403697057206 39 21.38432287958187 30.045450872348763 27.118893444310103 21.451332803759264 40 24.435599574917706 26.540275327693013 27.95998615585639 21.06413894153289 41 19.58770981577226 25.488623559744035 29.09084533133701 25.83282129314669 42 21.308622248514574 26.155520962137484 27.631950087898115 24.903906701449824 43 21.421372735270396 25.834650915649824 27.835190654288255 24.908785694791522 44 19.95554017317377 28.118248502377746 29.911812195348798 22.014399129099687 45 20.345173532070994 32.17650368287763 25.945800482715402 21.53252230233597 46 22.0722609407614 30.660890141841485 27.317255017358544 19.949593900038575 47 20.918836421075422 28.05954811373543 28.78850021269362 22.233115252495526 48 21.239401530479224 27.61251034880228 30.95545936484655 20.192628755871944 49 21.955851208999302 26.424856641453452 30.958737438498 20.660554711049244 50 20.19011302493013 29.878497818937504 29.004776839418607 20.926612316713754 51 20.141780497138928 30.466492750883173 27.836410402623677 21.55531634935422 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1152.0 1 2098.0 2 3044.0 3 8569.0 4 14094.0 5 9913.0 6 5732.0 7 5641.5 8 5551.0 9 5678.0 10 5805.0 11 5763.5 12 5722.0 13 5534.5 14 5347.0 15 5102.0 16 4857.0 17 5034.5 18 5212.0 19 5097.5 20 4983.0 21 5288.5 22 5594.0 23 6217.5 24 6841.0 25 8846.0 26 12421.5 27 13992.0 28 17225.5 29 20459.0 30 23430.0 31 26401.0 32 31309.0 33 36217.0 34 39985.5 35 43754.0 36 48322.5 37 52891.0 38 56507.5 39 60124.0 40 72179.0 41 84234.0 42 91589.0 43 98944.0 44 102803.0 45 106662.0 46 108540.5 47 110419.0 48 106355.0 49 102291.0 50 95583.0 51 88875.0 52 81654.0 53 74433.0 54 68186.0 55 61939.0 56 59129.0 57 56319.0 58 53730.0 59 51141.0 60 46435.0 61 41729.0 62 36960.0 63 32191.0 64 28029.0 65 23867.0 66 19908.0 67 15949.0 68 12846.0 69 9743.0 70 8008.0 71 6273.0 72 4934.5 73 3596.0 74 2958.0 75 1776.0 76 1232.0 77 912.5 78 593.0 79 417.5 80 242.0 81 149.5 82 57.0 83 54.5 84 52.0 85 31.0 86 10.0 87 8.0 88 6.0 89 4.0 90 2.0 91 1.5 92 1.0 93 1.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1311746.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.51980775094073 #Duplication Level Percentage of deduplicated Percentage of total 1 79.79458231666995 17.171640710213516 2 6.1609420196271065 2.6516457565413565 3 2.061935684393219 1.331173785688394 4 1.1593783375876612 0.997983957419669 5 0.8006157636872031 0.86145486584606 6 0.6109288968894281 0.788824344633287 7 0.5159943795910312 0.7772869894555448 8 0.42974379215499225 0.739840303146853 9 0.35477427792898486 0.6871206830409511 >10 5.808309494459087 30.955502685684483 >50 1.751537174338972 26.783807423103124 >100 0.547333049410692 15.07671290758989 >500 0.002854409644905793 0.38998051925160215 >1k 7.136024112264482E-4 0.1586335406130754 >5k 3.568012056132241E-4 0.6283915277722213 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8184 0.6239012735697307 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.029350194321156688 0.0 2 0.0 0.0 0.0 0.09414932464059353 0.0 3 0.0 0.0 0.0 0.13813649898684655 0.0 4 0.0 0.0 0.0 0.2113976333832922 0.0 5 0.0 0.0 0.0 0.3892521875424053 0.0 6 0.0 0.0 0.0 0.5570438179342647 0.0 7 0.0 0.0 0.0 0.6740634238640713 0.0 8 0.0 0.0 0.0 0.8732635738931165 0.0 9 0.0 0.0 0.0 0.9538431983021103 0.0 10 0.0 0.0 0.0 1.0981546732370444 0.0 11 0.0 0.0 0.0 1.3022338166077885 0.0 12 0.0 0.0 0.0 1.4624782541742074 0.0 13 0.0 0.0 0.0 1.5262863389711119 0.0 14 0.0 0.0 0.0 1.5587621384017942 0.0 15 0.0 0.0 0.0 1.6017582672255146 0.0 16 0.0 0.0 0.0 1.7003291795820228 0.0 17 0.0 0.0 0.0 1.8156716315506203 0.0 18 0.0 0.0 0.0 1.9535031934536107 0.0 19 0.0 0.0 0.0 2.0433071646492538 0.0 20 0.0 0.0 0.0 2.1397435174187684 0.0 21 0.0 0.0 0.0 2.275592988276694 0.0 22 0.0 0.0 0.0 2.416702623831138 0.0 23 0.0 0.0 0.0 2.560556693140288 0.0 24 0.0 0.0 0.0 2.675136802399245 0.0 25 0.0 0.0 0.0 2.777138256949135 0.0 26 0.0 0.0 0.0 2.8754042322217868 0.0 27 0.0 0.0 0.0 2.990213044293636 0.0 28 0.0 0.0 0.0 3.109290975539472 0.0 29 0.0 0.0 0.0 3.252077765055125 0.0 30 0.0 0.0 0.0 3.401573170415614 0.0 31 0.0 0.0 0.0 3.5326198822028045 0.0 32 0.0 0.0 0.0 3.6574916180419077 0.0 33 7.623427096404335E-5 0.0 0.0 3.7875472843065654 0.0 34 7.623427096404335E-5 0.0 0.0 3.9312488850737872 0.0 35 7.623427096404335E-5 0.0 0.0 4.1043769144331295 0.0 36 7.623427096404335E-5 0.0 0.0 4.243961864568293 0.0 37 7.623427096404335E-5 0.0 0.0 4.399098605980122 0.0 38 7.623427096404335E-5 0.0 0.0 4.595249385170605 0.0 39 7.623427096404335E-5 0.0 0.0 4.952025773282328 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATAT 50 2.1827873E-11 45.0 27 CGTGCTA 20 7.0336513E-4 45.0 20 ATAGCGC 20 7.0336513E-4 45.0 35 CACGACG 195 0.0 45.0 26 TCGTCGA 25 3.8911086E-5 45.0 44 ATACGCC 20 7.0336513E-4 45.0 4 GCGTACC 20 7.0336513E-4 45.0 30 TCACGAC 205 0.0 42.80488 25 CGGTCTA 205 0.0 42.80488 31 CGTTTTT 4540 0.0 42.12555 1 TATAGCG 120 0.0 41.250004 1 GGCGATA 265 0.0 40.75472 8 ACGGGTC 105 0.0 40.714287 5 TGATTCG 45 1.9286745E-8 40.0 15 CCCGATC 180 0.0 40.0 41 CTCACGA 220 0.0 39.886364 24 TACGGGA 450 0.0 39.0 4 GCGATAT 110 0.0 38.863636 9 ATAGGGA 1480 0.0 38.766895 4 ATTAGCG 175 0.0 38.571426 1 >>END_MODULE