SRR1547039_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547039_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1209159
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5238	0.43319364947041705	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1403	0.11603105960423733	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1385	0.11454242163354861	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1322	0.10933218873613809	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1223	0.10114467989735014	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCAATCG	35	1.2119926E-7	45.000004	24
TCGTCGA	35	1.2119926E-7	45.000004	32
TCCAATC	35	1.2119926E-7	45.000004	23
CGTCGAC	35	1.2119926E-7	45.000004	33
ATACGAG	55	1.8189894E-12	45.000004	1
TCACGAG	20	7.0334325E-4	45.0	1
GCCCCTA	20	7.0334325E-4	45.0	41
CTTAACG	25	3.8909264E-5	45.0	1
ATGGGCG	225	0.0	45.0	5
TAATACG	40	6.8157533E-9	45.0	1
AACCGAT	20	7.0334325E-4	45.0	41
ACGCCGG	45	3.8562575E-10	45.0	27
CCGATTC	25	3.8909264E-5	45.0	21
ACGTTAT	20	7.0334325E-4	45.0	15
CGTGCAA	20	7.0334325E-4	45.0	30
GCGCGAT	25	3.8909264E-5	45.0	11
GAATCGT	20	7.0334325E-4	45.0	16
CACGATA	25	3.8909264E-5	45.0	30
ATATGCG	80	0.0	45.0	1
TGACGTA	40	6.8157533E-9	45.0	44