##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547033_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1269774 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.45325782383322 31.0 31.0 33.0 30.0 34.0 2 31.860568101095154 31.0 31.0 34.0 30.0 34.0 3 31.98327418895016 33.0 31.0 34.0 30.0 34.0 4 35.720624300072295 37.0 35.0 37.0 33.0 37.0 5 35.62774871748831 37.0 35.0 37.0 33.0 37.0 6 35.69477324311256 37.0 35.0 37.0 33.0 37.0 7 36.01539407800128 37.0 35.0 37.0 35.0 37.0 8 35.99857769965364 37.0 35.0 37.0 35.0 37.0 9 37.77186727716901 39.0 38.0 39.0 35.0 39.0 10 37.229202992028505 39.0 37.0 39.0 34.0 39.0 11 36.962212173189876 39.0 37.0 39.0 33.0 39.0 12 36.32631791169137 38.0 35.0 39.0 32.0 39.0 13 36.11432506887052 38.0 35.0 39.0 32.0 39.0 14 37.06090847662655 39.0 35.0 41.0 31.0 41.0 15 37.321173689176184 39.0 35.0 41.0 32.0 41.0 16 37.42942681138533 39.0 35.0 41.0 33.0 41.0 17 37.381434018967155 39.0 35.0 41.0 32.0 41.0 18 37.298151482074765 39.0 35.0 41.0 32.0 41.0 19 37.25857121030987 39.0 35.0 41.0 32.0 41.0 20 37.10250643027815 39.0 35.0 41.0 32.0 41.0 21 37.00093087431307 39.0 35.0 41.0 32.0 41.0 22 36.93447022856036 39.0 35.0 41.0 32.0 41.0 23 36.90237160313568 38.0 35.0 41.0 32.0 41.0 24 36.807967402073125 38.0 35.0 41.0 31.0 41.0 25 36.72310820665725 38.0 35.0 41.0 31.0 41.0 26 36.61266335584128 38.0 35.0 41.0 31.0 41.0 27 36.51699751294325 38.0 35.0 40.0 31.0 41.0 28 36.42788795486441 38.0 35.0 40.0 31.0 41.0 29 36.47817958156333 38.0 35.0 40.0 31.0 41.0 30 36.46134508975613 38.0 35.0 40.0 31.0 41.0 31 36.3531793846779 38.0 35.0 40.0 30.0 41.0 32 36.30375090370412 38.0 35.0 41.0 30.0 41.0 33 36.21983597081056 38.0 35.0 41.0 30.0 41.0 34 36.116480570558224 38.0 35.0 41.0 30.0 41.0 35 36.0326656554631 38.0 35.0 41.0 30.0 41.0 36 35.930790833644416 38.0 35.0 41.0 30.0 41.0 37 35.87822478645806 38.0 35.0 41.0 29.0 41.0 38 35.80517084142532 38.0 35.0 41.0 29.0 41.0 39 35.738696019921655 38.0 35.0 40.0 29.0 41.0 40 35.60820901987283 38.0 35.0 40.0 29.0 41.0 41 35.57151351342837 38.0 35.0 40.0 29.0 41.0 42 35.53576620721483 38.0 34.0 40.0 28.0 41.0 43 35.45936520987199 38.0 34.0 40.0 28.0 41.0 44 35.350561596000546 37.0 34.0 40.0 28.0 41.0 45 35.24173750604438 37.0 34.0 40.0 27.0 41.0 46 35.22748930124573 37.0 34.0 40.0 27.0 41.0 47 35.21412078054835 37.0 34.0 40.0 28.0 41.0 48 35.13789067975876 37.0 34.0 40.0 27.0 41.0 49 35.073279181964665 37.0 34.0 40.0 27.0 41.0 50 34.98165657825723 37.0 34.0 40.0 27.0 41.0 51 34.62683044384276 36.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 1.0 10 2.0 11 5.0 12 11.0 13 15.0 14 25.0 15 34.0 16 89.0 17 200.0 18 450.0 19 918.0 20 1553.0 21 2591.0 22 3939.0 23 5748.0 24 8334.0 25 12030.0 26 15890.0 27 19401.0 28 21178.0 29 24198.0 30 28721.0 31 35287.0 32 44758.0 33 59046.0 34 103329.0 35 155688.0 36 87029.0 37 115955.0 38 176113.0 39 346946.0 40 289.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.321639913874435 23.607508107742007 28.220454978602493 12.850396999781063 2 32.99421786869159 24.669350608848504 28.74511527248156 13.591316249978341 3 30.586230305550437 25.231419134428645 29.986123514893205 14.196227045127715 4 27.706741514631737 26.95400913863412 29.94934531656814 15.389904030165999 5 24.23439131688001 31.495604729660553 29.174640526581896 15.09536342687754 6 22.58110498403653 40.64172049514323 26.454786442311786 10.322388078508459 7 86.60344281738325 4.261782017902398 6.9137500059065635 2.221025158807788 8 87.16133737184727 3.7898082650928435 6.798375143923249 2.250479219136634 9 82.85080652147548 5.607690817421053 8.284387615433927 3.2571150456695444 10 45.372404853147096 29.64385788337137 13.948308911664595 11.035428351816938 11 38.298075090527924 23.45440999736961 22.994879403736412 15.252635508366055 12 34.65152066430719 22.742157265781156 26.22702937688124 16.379292693030415 13 24.958929699300818 30.15733508482612 27.38676331378655 17.496971902086514 14 17.998793486084924 33.591016984124735 30.563864120701794 17.846325409088546 15 17.254724069007555 26.707272317751034 39.44788600176095 16.59011761148047 16 22.006357036764022 23.65145293571927 36.78339610040842 17.558793927108287 17 22.155832455224317 23.609240699526058 27.6566538612383 26.57827298401133 18 23.869365729649527 25.859089885286675 31.341404060880123 18.93014032418367 19 27.356757974253686 26.527004018037854 26.565987333178974 19.550250674529483 20 28.173202475401133 26.845170872926992 26.43273527415115 18.548891377520725 21 25.81648387823345 25.915635380784295 29.757342645226633 18.51053809575562 22 24.15988987016587 22.416272502035795 29.440435857089533 23.983401770708802 23 21.501070269197513 27.039536169428573 29.511314611891564 21.94807894948235 24 20.750227993327947 25.6997701953261 34.33902410980222 19.210977701543737 25 20.997516093415047 26.49825874525703 32.13280473533086 20.371420425997066 26 20.17721263783949 31.31305255895931 26.78106497691715 21.728669826284047 27 19.521426647576657 30.07275310409569 31.227446773992853 19.178373474334805 28 18.07006601174697 27.681461425419013 34.929129120615166 19.31934344221885 29 19.416526090469645 26.866828270227614 33.75443189102943 19.962213748273314 30 21.48429563056103 28.153986457432584 31.053557562211857 19.30816034979453 31 27.358096795177723 25.55848521075404 27.83526832333943 19.248149670728807 32 27.125141954395033 26.64875796795335 27.574749522355944 18.651350555295668 33 25.981395114406187 26.89470724711642 27.006853188047636 20.11704445042976 34 21.196606640236766 26.983778215650972 29.431694143997277 22.38792100011498 35 21.33151253687664 27.636020268173706 29.830269008500725 21.20219818644893 36 27.269340843331175 26.534328156034064 27.6394066975698 18.556924303064957 37 21.911064488641287 31.00591128815049 27.188854079544868 19.894170143663363 38 22.201746137501637 31.343924194384197 25.34852658819601 21.105803079918157 39 22.274121221571715 28.681954426535743 26.805084999377844 22.2388393525147 40 23.798486974847492 25.595105900735092 28.307714601181 22.29869252323642 41 19.808249342008892 25.186765518903364 29.080923061899206 25.924062077188538 42 21.71843178392375 26.323503237584013 27.238232945390283 24.719832033101955 43 21.831444020747 25.115020468209302 27.880945743100742 25.172589767942956 44 20.92340841756092 28.19115842661765 30.07818714196385 20.807246013857583 45 20.350786832932474 31.662012295101334 26.24278021128169 21.7444206606845 46 22.29971632747245 29.221971783955254 27.795576220650286 20.68273566792201 47 21.491541014385238 27.745803583944863 28.96350059144383 21.79915481022607 48 22.18977550335729 26.81965452119826 29.68780271134863 21.302767264095817 49 21.676062039386537 26.398792226018173 30.413443652177474 21.511702082417816 50 20.84189784953858 29.953676796028265 28.761259877742024 20.443165476691128 51 20.391266477341638 31.10435400315332 26.58843227219962 21.915947247305425 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 730.0 1 1776.0 2 2822.0 3 6192.5 4 9563.0 5 6953.5 6 4344.0 7 4396.5 8 4449.0 9 4587.0 10 4725.0 11 4655.0 12 4585.0 13 4448.0 14 4311.0 15 4192.5 16 4074.0 17 4052.5 18 4031.0 19 4284.0 20 4537.0 21 5090.0 22 5643.0 23 6290.5 24 6938.0 25 8531.0 26 12142.0 27 14160.0 28 15956.5 29 17753.0 30 20663.0 31 23573.0 32 27181.5 33 30790.0 34 38479.0 35 46168.0 36 45316.0 37 44464.0 38 52729.0 39 60994.0 40 70607.5 41 80221.0 42 88584.0 43 96947.0 44 101371.5 45 105796.0 46 102024.5 47 98253.0 48 99938.5 49 101624.0 50 96597.0 51 91570.0 52 84580.5 53 77591.0 54 71082.0 55 64573.0 56 58988.5 57 53404.0 58 50085.0 59 46766.0 60 42160.5 61 37555.0 62 35310.0 63 33065.0 64 28958.5 65 24852.0 66 21423.0 67 17994.0 68 15153.5 69 12313.0 70 9986.5 71 7660.0 72 6311.0 73 4962.0 74 3935.5 75 2214.5 76 1520.0 77 1112.5 78 705.0 79 537.5 80 370.0 81 264.5 82 159.0 83 144.0 84 129.0 85 76.0 86 23.0 87 17.5 88 12.0 89 10.5 90 9.0 91 6.5 92 4.0 93 5.5 94 7.0 95 4.0 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1269774.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.788037315687177 #Duplication Level Percentage of deduplicated Percentage of total 1 80.30306382901519 15.890400236125618 2 6.099864623927273 2.41408697597826 3 2.001125445189555 1.1879503494834611 4 1.068695385428087 0.8458953666381471 5 0.7417202754028875 0.7338594243737054 6 0.5437313228040704 0.6455625423212937 7 0.4043947654349121 0.5601525096086222 8 0.3878018114777666 0.6139069373290504 9 0.30329125341845276 0.5401384776149292 >10 5.392338416184128 27.519683511938727 >50 1.9555168515122119 27.22243661785919 >100 0.7936532772268418 20.80293447949335 >500 0.0036020572340098715 0.4275074629968367 >1k 8.004571631133048E-4 0.1916576621808716 >5k 4.002285815566524E-4 0.40382744605796045 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5099 0.401567523039533 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.022996218224660452 0.0 2 0.0 0.0 0.0 0.06552347110588183 0.0 3 0.0 0.0 0.0 0.10009655261487477 0.0 4 0.0 0.0 0.0 0.16963648649287197 0.0 5 0.0 0.0 0.0 0.3191119049531649 0.0 6 0.0 0.0 0.0 0.4655946648773719 0.0 7 0.0 0.0 0.0 0.5553744209599504 0.0 8 0.0 0.0 0.0 0.737217804113173 0.0 9 0.0 0.0 0.0 0.8069940005071768 0.0 10 0.0 0.0 0.0 0.947806460047221 0.0 11 0.0 0.0 0.0 1.1300436140604548 0.0 12 0.0 0.0 0.0 1.295821146125216 0.0 13 0.0 0.0 0.0 1.3557530710189372 0.0 14 0.0 0.0 0.0 1.381505685263677 0.0 15 0.0 0.0 0.0 1.422457854704853 0.0 16 0.0 0.0 0.0 1.5034171435231782 0.0 17 0.0 0.0 0.0 1.5942994580137884 0.0 18 0.0 0.0 0.0 1.7169984579933122 0.0 19 0.0 0.0 0.0 1.7940987923835265 0.0 20 0.0 0.0 0.0 1.8834060234340915 0.0 21 0.0 0.0 0.0 1.9965757686013417 0.0 22 0.0 0.0 0.0 2.112738172304678 0.0 23 0.0 0.0 0.0 2.230081888588048 0.0 24 0.0 0.0 0.0 2.326634503462821 0.0 25 7.875417200226182E-5 0.0 0.0 2.414366651073341 0.0 26 7.875417200226182E-5 0.0 0.0 2.5009174861038264 0.0 27 7.875417200226182E-5 0.0 0.0 2.6061330598988484 0.0 28 7.875417200226182E-5 0.0 0.0 2.706544629201732 0.0 29 7.875417200226182E-5 0.0 0.0 2.8285348416332354 0.0 30 7.875417200226182E-5 0.0 0.0 2.9773014725455083 0.0 31 7.875417200226182E-5 0.0 0.0 3.0960627639249187 0.0 32 7.875417200226182E-5 0.0 0.0 3.204428504600031 0.0 33 1.5750834400452365E-4 0.0 0.0 3.325788683655517 0.0 34 1.5750834400452365E-4 0.0 0.0 3.4595132677153573 0.0 35 1.5750834400452365E-4 0.0 0.0 3.619541745223953 0.0 36 1.5750834400452365E-4 0.0 0.0 3.7492498665116782 0.0 37 1.5750834400452365E-4 0.0 0.0 3.8885659967836794 0.0 38 1.5750834400452365E-4 0.0 0.0 4.087577789433396 0.0 39 1.5750834400452365E-4 0.0 0.0 4.528758660990066 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGCAT 25 3.8910366E-5 45.000004 45 ACGTATA 25 3.8910366E-5 45.000004 22 CTATCGA 20 7.033566E-4 45.0 19 TAACGCG 55 1.8189894E-12 45.0 1 CTACGTA 20 7.033566E-4 45.0 21 TCGTATA 20 7.033566E-4 45.0 23 GCGATAT 35 1.2120654E-7 45.0 9 GCTCGAT 40 6.8157533E-9 45.0 32 TATCGAT 20 7.033566E-4 45.0 11 CGATACA 35 1.2120654E-7 45.0 10 TCACGAC 205 0.0 43.90244 25 CACGACG 215 0.0 42.906975 26 TATCGCG 55 6.184564E-11 40.909092 1 CTAGACG 50 1.0822987E-9 40.500004 1 AGGGCGA 585 0.0 40.384617 6 CGTTTTT 3415 0.0 40.256226 1 ACGGTCT 235 0.0 40.212765 30 ATCGACA 210 0.0 39.642857 18 CGGTCTA 245 0.0 39.489796 31 GGGCGAT 950 0.0 39.078945 7 >>END_MODULE