SRR1547030_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547030_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1477436
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17024	1.1522664941154812	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2057	0.13922768905049018	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2007	0.13584344770264162	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1758	0.11898992579035571	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1727	0.1168916961546896	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGTC	30	2.1659234E-6	45.000004	44
TCGATAG	95	0.0	45.000004	1
CTTATCG	30	2.1659234E-6	45.000004	24
TTCGGCG	110	0.0	45.000004	33
GTTGCGA	30	2.1659234E-6	45.000004	9
GCGAACC	20	7.033942E-4	45.0	25
ATAATCG	20	7.033942E-4	45.0	1
TAGAACG	35	1.2122473E-7	45.0	1
TAGCGAT	40	6.8175723E-9	45.0	1
CCGGAAT	25	3.891348E-5	45.0	36
CCGTGCC	20	7.033942E-4	45.0	12
CCGTAAG	75	0.0	45.0	1
ACCGTGC	25	3.891348E-5	45.0	11
CGGTCTA	200	0.0	45.0	31
CGCAATA	20	7.033942E-4	45.0	41
TAGTCCG	25	3.891348E-5	45.0	11
TAGTACG	20	7.033942E-4	45.0	1
CGTTTTT	8015	0.0	43.905178	1
TTTAGCG	90	0.0	42.5	1
TATAGCG	80	0.0	42.1875	1