SRR1547028_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547028_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	880918
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3750	0.42569228918015073	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2385	0.27074029591857585	No Hit
TTGTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1083	0.12293993311522752	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	900	0.10216614940323618	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGCGT	35	1.2115015E-7	45.000004	44
ACGTTAG	35	1.2115015E-7	45.000004	1
AGCCCGA	35	1.2115015E-7	45.000004	15
AACCACG	35	1.2115015E-7	45.000004	27
CCGGATA	35	1.2115015E-7	45.000004	20
TAAACGG	140	0.0	45.000004	2
GTTAGCG	35	1.2115015E-7	45.000004	1
CGCAGAT	35	1.2115015E-7	45.000004	28
ACGCTAG	35	1.2115015E-7	45.000004	1
CATCGTT	35	1.2115015E-7	45.000004	40
GTATACG	35	1.2115015E-7	45.000004	1
AGCTCCG	35	1.2115015E-7	45.000004	38
TAAGCGT	35	1.2115015E-7	45.000004	33
GTACGCG	35	1.2115015E-7	45.000004	1
CGGACTA	35	1.2115015E-7	45.000004	17
AACCGTT	25	3.8900616E-5	45.0	20
AACGTAC	25	3.8900616E-5	45.0	9
CTATGCG	20	7.032388E-4	45.0	1
AGACTAT	50	2.1827873E-11	45.0	18
GTACCTC	25	3.8900616E-5	45.0	42