##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547017_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2438827 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.59532143936409 31.0 31.0 33.0 30.0 34.0 2 31.98310007228885 31.0 31.0 34.0 30.0 34.0 3 32.05129351118386 33.0 31.0 34.0 30.0 34.0 4 35.75796889242246 37.0 35.0 37.0 35.0 37.0 5 35.70854923288942 37.0 35.0 37.0 33.0 37.0 6 35.761313533104236 37.0 35.0 37.0 33.0 37.0 7 36.099306756895835 37.0 35.0 37.0 35.0 37.0 8 36.03133801618565 37.0 35.0 37.0 35.0 37.0 9 37.793877958543185 39.0 38.0 39.0 35.0 39.0 10 37.311492779110615 39.0 37.0 39.0 34.0 39.0 11 37.05766214659752 39.0 37.0 39.0 33.0 39.0 12 36.65399677795924 39.0 35.0 39.0 33.0 39.0 13 36.54138936464128 39.0 35.0 39.0 32.0 39.0 14 37.589535051071685 40.0 36.0 41.0 32.0 41.0 15 37.691940018705715 40.0 36.0 41.0 33.0 41.0 16 37.7614500741545 40.0 36.0 41.0 33.0 41.0 17 37.68921575823131 40.0 36.0 41.0 33.0 41.0 18 37.586500395477 39.0 36.0 41.0 33.0 41.0 19 37.51175462630191 39.0 36.0 41.0 33.0 41.0 20 37.36860671134115 39.0 35.0 41.0 32.0 41.0 21 37.29612596547439 39.0 35.0 41.0 32.0 41.0 22 37.21812781308391 39.0 35.0 41.0 32.0 41.0 23 37.113205651733395 39.0 35.0 41.0 32.0 41.0 24 37.0071792710184 39.0 35.0 41.0 32.0 41.0 25 36.87030445373944 39.0 35.0 41.0 31.0 41.0 26 36.708749739116385 38.0 35.0 41.0 31.0 41.0 27 36.618615834579494 38.0 35.0 41.0 31.0 41.0 28 36.64031069034417 38.0 35.0 41.0 31.0 41.0 29 36.633533251846075 38.0 35.0 41.0 31.0 41.0 30 36.53176834601224 38.0 35.0 41.0 31.0 41.0 31 36.403206951538586 38.0 35.0 41.0 30.0 41.0 32 36.271355450796634 38.0 35.0 41.0 30.0 41.0 33 36.09788763204606 38.0 35.0 41.0 30.0 41.0 34 35.86316290577396 38.0 35.0 41.0 29.0 41.0 35 35.7173395242877 38.0 35.0 41.0 28.0 41.0 36 35.59570564045748 38.0 35.0 41.0 27.0 41.0 37 35.52274433569909 38.0 35.0 41.0 27.0 41.0 38 35.397279511830895 38.0 35.0 40.0 27.0 41.0 39 35.29301094337565 38.0 34.0 40.0 26.0 41.0 40 35.14879325183787 38.0 34.0 40.0 26.0 41.0 41 35.0693714642326 38.0 34.0 40.0 26.0 41.0 42 34.97972918948331 37.0 34.0 40.0 25.0 41.0 43 34.86028939322059 37.0 34.0 40.0 25.0 41.0 44 34.702149844986955 37.0 34.0 40.0 24.0 41.0 45 34.60175362992127 37.0 34.0 40.0 24.0 41.0 46 34.53885617963062 36.0 34.0 40.0 24.0 41.0 47 34.46390457379716 36.0 34.0 40.0 23.0 41.0 48 34.34913997589825 36.0 34.0 40.0 23.0 41.0 49 34.24804957465208 36.0 33.0 40.0 24.0 41.0 50 34.149197134524094 35.0 33.0 40.0 24.0 41.0 51 33.79207668276594 35.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 4.0 11 4.0 12 4.0 13 15.0 14 17.0 15 80.0 16 204.0 17 493.0 18 1143.0 19 2175.0 20 3681.0 21 5966.0 22 8821.0 23 12888.0 24 18671.0 25 27587.0 26 37271.0 27 43742.0 28 46344.0 29 50316.0 30 56862.0 31 66565.0 32 81167.0 33 104850.0 34 176498.0 35 250473.0 36 192253.0 37 247912.0 38 359159.0 39 643208.0 40 451.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.50072514368588 23.961027165928538 26.445008194513182 15.093239495872401 2 34.43557087075057 25.242216852609882 26.319866066760785 14.002346209878766 3 29.969202407550842 25.40836229876084 30.817725078490604 13.804710215197716 4 26.137319293250407 28.090676378439305 30.168191511739046 15.603812816571244 5 23.900014228151484 31.747516326496307 28.92341277179562 15.429056673556591 6 22.797270983140667 40.73614077587299 26.099145203821344 10.367443037164998 7 86.726528777974 3.2833817240829304 8.256797222599225 1.7332922753438438 8 86.18938530695289 3.0620868146859124 8.129235899061312 2.6192919792998848 9 80.54913284132084 4.750152429836146 10.953011427214804 3.747703301628201 10 43.37859963006806 26.320850146402346 16.876268796433695 13.424281427095893 11 34.19488139175104 25.822085781402286 23.939746443679688 16.04328638316699 12 29.406308852575442 22.164261753703727 28.91603217448388 19.513397219236953 13 24.9374391869534 25.14729417051722 31.196103700672495 18.719162941856883 14 22.166598942852445 26.443901104916424 32.199905938387595 19.189594013843543 15 21.70502458763988 22.893710788014072 36.197237442426214 19.204027181919834 16 25.40692718261689 21.382697501708815 33.58528505711968 19.625090258554625 17 24.605230301288284 22.015419707916962 29.385725186739364 23.99362480405539 18 25.65200401668507 21.737745235721928 31.310174932457286 21.30007581513572 19 27.666743069516613 25.08669126592415 26.73609075182454 20.51047491273469 20 28.909348633584912 24.58374456244744 26.028168459673438 20.478738344294204 21 27.468163998512402 24.945024800857134 27.780363264799018 19.806447935831446 22 26.152408514421072 22.298219594911817 28.038151127570753 23.511220763096357 23 24.669564507855622 24.884462899582463 27.67231952081882 22.773653071743098 24 24.407594306607233 23.748670979942407 30.808868361716513 21.034866351733847 25 24.92710635071696 23.682491624047135 28.86055468469063 22.52984734054527 26 22.05187165797328 25.9724859532882 28.281218799037404 23.694423589701113 27 22.882680895364864 24.28204214567085 28.673415539519613 24.161861419444676 28 22.002503662621418 26.12370619154208 29.653107826016363 22.220682319820142 29 23.364592896503115 24.086169293680936 28.675506708757943 23.87373110105801 30 24.375078675117177 24.353592936276332 29.037648016854007 22.233680371752488 31 25.880351496846636 24.762724047257144 26.755485321427063 22.601439134469153 32 26.829373301181263 24.87626223590275 25.481553222102267 22.81281124081372 33 25.82356190086464 25.099238281354108 25.410494471317563 23.66670534646369 34 23.161462457156656 27.13119872791305 27.30078845280949 22.406550362120807 35 22.832041797142644 27.353641730225224 27.40928323329207 22.40503323934006 36 26.21920292009232 27.812673879697087 24.42100239172356 21.54712080848703 37 23.90866592833358 28.03897119393873 25.866164348680737 22.186198529046955 38 24.886759085412784 27.685973625845538 25.6340855665449 21.793181722196778 39 24.35621714865384 26.22945374969196 25.487867733135644 23.926461368518552 40 25.98130166674389 24.496079467711322 26.720960527335478 22.80165833820931 41 22.53247155292278 24.032823976444416 27.151249350609945 26.283455120022865 42 24.00395764029183 25.017354654512193 26.26647974620586 24.71220795899012 43 22.992159755489013 24.154726842043324 27.93281360260486 24.920299799862804 44 23.118162952927783 25.137084344235976 27.492765989551533 24.25198671328471 45 22.251393805300662 25.416849985669337 26.941394367046122 25.39036184198387 46 24.254569922343816 25.200065441296164 26.54460525490328 24.000759381456742 47 23.04911336474461 25.446536388189894 27.979434375624017 23.524915871441475 48 23.621806712817268 24.70941973333902 28.14131547666153 23.527458077182185 49 23.869753779173347 24.144024975941303 28.145579821774973 23.840641423110373 50 22.796573926727888 25.545108365620028 28.161940145816 23.49637756183608 51 22.5432554256616 25.87358594931088 26.988220156657277 24.594938468370245 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1216.0 1 2311.5 2 3407.0 3 17825.5 4 32244.0 5 22184.5 6 12125.0 7 12094.5 8 12064.0 9 12429.0 10 12794.0 11 13065.5 12 13337.0 13 13146.0 14 12955.0 15 12740.0 16 12525.0 17 11882.0 18 11239.0 19 11503.0 20 11767.0 21 11756.0 22 11745.0 23 12051.0 24 12357.0 25 13389.0 26 16645.0 27 18869.0 28 21603.5 29 24338.0 30 27288.5 31 30239.0 32 34852.0 33 39465.0 34 44543.5 35 49622.0 36 55114.5 37 60607.0 38 65440.5 39 70274.0 40 81257.5 41 92241.0 42 105776.5 43 119312.0 44 128384.5 45 137457.0 46 152615.5 47 167774.0 48 177989.5 49 188205.0 50 183212.5 51 178220.0 52 168501.5 53 158783.0 54 151416.0 55 144049.0 56 139957.0 57 135865.0 58 130273.5 59 124682.0 60 122480.5 61 120279.0 62 111877.5 63 103476.0 64 93885.5 65 84295.0 66 73768.5 67 63242.0 68 55835.5 69 48429.0 70 42038.5 71 35648.0 72 30644.0 73 25640.0 74 21942.5 75 15208.0 76 12171.0 77 9379.5 78 6588.0 79 5145.0 80 3702.0 81 2673.5 82 1645.0 83 1209.0 84 773.0 85 538.0 86 303.0 87 200.5 88 98.0 89 72.0 90 46.0 91 41.0 92 36.0 93 21.5 94 7.0 95 6.0 96 5.0 97 3.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2438827.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.416454634818336 #Duplication Level Percentage of deduplicated Percentage of total 1 76.54329048490392 18.689157797243787 2 6.654392226568525 3.249533318445964 3 2.4468142008864184 1.7922758380731756 4 1.4411798404457143 1.4075400877943003 5 1.0149580688043192 1.2390838821601742 6 0.7947140987500779 1.1642460443869092 7 0.6684173685993208 1.1424267650270972 8 0.5828920794005962 1.1385726410943664 9 0.5192540299607676 1.1410508219835314 >10 8.281668558433891 50.21566804597472 >50 0.9930380991511245 14.881787711085828 >100 0.05547901460837508 2.257160301043455 >500 0.0022054384056367847 0.35092970462278467 >1k 0.0015268419731331586 0.5418450739106051 >5k 0.0 0.0 >10k+ 1.6964910812590652E-4 0.7887219671532629 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19041 0.7807441856269428 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.200663679711599E-5 0.0 0.0 0.06658938907925818 0.0 2 8.200663679711599E-5 0.0 0.0 0.1964058951290928 0.0 3 8.200663679711599E-5 0.0 0.0 0.3119942496946278 0.0 4 8.200663679711599E-5 0.0 0.0 0.5380045407074795 0.0 5 8.200663679711599E-5 0.0 0.0 0.9377458917750213 0.0 6 8.200663679711599E-5 0.0 0.0 1.7404268527451927 0.0 7 8.200663679711599E-5 0.0 0.0 2.1231928299957317 0.0 8 8.200663679711599E-5 0.0 0.0 3.0199764066905934 0.0 9 8.200663679711599E-5 0.0 0.0 3.508325928817419 0.0 10 8.200663679711599E-5 0.0 0.0 4.157900498887375 0.0 11 8.200663679711599E-5 0.0 0.0 4.667202716715864 0.0 12 8.200663679711599E-5 0.0 0.0 5.05374099925907 0.0 13 8.200663679711599E-5 0.0 0.0 5.272739722825769 0.0 14 8.200663679711599E-5 0.0 0.0 5.403253285288378 0.0 15 8.200663679711599E-5 0.0 0.0 5.521711872141813 0.0 16 1.2300995519567398E-4 0.0 0.0 5.706431821527316 0.0 17 1.2300995519567398E-4 0.0 0.0 5.89968046113972 0.0 18 1.2300995519567398E-4 0.0 0.0 6.1558281911755115 0.0 19 1.2300995519567398E-4 0.0 0.0 6.304055187186299 0.0 20 1.2300995519567398E-4 0.0 0.0 6.46437816212466 0.0 21 1.2300995519567398E-4 0.0 0.0 6.655207605951549 0.0 22 1.2300995519567398E-4 0.0 0.0 6.853089620542991 0.0 23 1.2300995519567398E-4 0.0 0.0 7.082339173709328 0.0 24 1.2300995519567398E-4 0.0 0.0 7.2720615279394565 0.0 25 1.2300995519567398E-4 0.0 0.0 7.441200216333508 0.0 26 1.2300995519567398E-4 0.0 0.0 7.601482187953471 0.0 27 1.2300995519567398E-4 0.0 0.0 7.769636796705957 0.0 28 1.2300995519567398E-4 0.0 0.0 7.937996422050436 0.0 29 1.2300995519567398E-4 0.0 0.0 8.122552358162347 0.0 30 1.2300995519567398E-4 0.0 0.0 8.392190179951264 0.0 31 1.2300995519567398E-4 0.0 0.0 8.598846904679995 0.0 32 1.2300995519567398E-4 0.0 0.0 8.81682054528673 0.0 33 1.2300995519567398E-4 0.0 0.0 9.019171921583613 0.0 34 1.6401327359423198E-4 0.0 0.0 9.230298008017789 0.0 35 1.6401327359423198E-4 0.0 0.0 9.46713317508786 0.0 36 1.6401327359423198E-4 0.0 0.0 9.671493713986273 0.0 37 1.6401327359423198E-4 0.0 0.0 9.884751972977172 0.0 38 2.0501659199278997E-4 0.0 0.0 10.137947464088269 0.0 39 2.0501659199278997E-4 0.0 0.0 10.531620324032824 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 11315 0.0 42.176315 1 TCGTTAG 85 0.0 39.705883 1 TCGATAG 135 0.0 38.333336 1 AGGGCGA 2825 0.0 38.15044 6 GCGATCG 250 0.0 37.8 9 GGGCGAT 6210 0.0 37.500004 7 TAAGGGA 1985 0.0 37.29219 4 CGAATAT 230 0.0 37.173916 14 GCGATAC 185 0.0 36.48649 9 CACGACC 1955 0.0 36.023018 27 TCGTTAA 25 0.0021075709 36.000004 7 CGATCGA 50 4.8827133E-8 36.000004 10 AACACGT 1805 0.0 35.900276 41 CGTTAGG 370 0.0 35.87838 2 ACACGTG 1830 0.0 35.286884 42 TACGGGA 625 0.0 35.28 4 ATCCTGC 1275 0.0 35.11765 20 TTAGGGA 1970 0.0 35.063454 4 ATTGGGA 1375 0.0 35.018185 4 AGGGTAC 1080 0.0 35.000004 6 >>END_MODULE