SRR1547016_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547016_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	554709
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2087	0.37623330430910623	No Hit
GAGCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCT	1272	0.22930942169678156	No Hit
AAGCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCT	1081	0.19487695350174594	No Hit
AAGAGCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTT	985	0.17757058205293225	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	938	0.16909767103111722	No Hit
CTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGCT	889	0.16026421060411855	No Hit
CCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC	786	0.1416959162371622	No Hit
GAGAGCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTT	734	0.1323216317023881	No Hit
TAGAGCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTT	725	0.13069915937906182	No Hit
GCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC	709	0.12781476413759285	No Hit
GCTATGGGGATTCGGATTTTTTTTAAAGGTGCTTGCTTGTCAATGTAAATA	572	0.10311712988251498	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCGAG	110	0.0	45.000004	1
AGCATAG	55	1.8189894E-12	45.000004	1
AGTTAAG	45	3.8380676E-10	45.000004	1
CGTCAGG	55	1.8189894E-12	45.000004	2
AACCGAA	25	3.8881873E-5	45.0	37
AATCCGC	20	7.0301275E-4	45.0	19
TCGTTAG	35	1.2104101E-7	45.0	1
AGTCCAA	35	1.2104101E-7	45.0	43
CGAACAT	20	7.0301275E-4	45.0	40
GTCGATG	40	6.8048394E-9	45.0	1
CGAGTAT	25	3.8881873E-5	45.0	33
TTAGACA	20	7.0301275E-4	45.0	11
ATTACGA	20	7.0301275E-4	45.0	31
CCAATCT	20	7.0301275E-4	45.0	31
TAAACGG	50	2.1827873E-11	45.0	2
CACGATC	20	7.0301275E-4	45.0	17
CCGCTAT	20	7.0301275E-4	45.0	22
TCGATAG	20	7.0301275E-4	45.0	1
CCCGTAT	20	7.0301275E-4	45.0	34
CGCTAAG	20	7.0301275E-4	45.0	29