SRR1547014_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547014_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2520983
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9938	0.3942113056692568	No Hit
GAGAGCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTT	3920	0.15549490020361106	No Hit
GAGCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCT	3048	0.12090521832158328	No Hit
AAGAGCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTT	2702	0.1071804133546319	No Hit
TAGAGCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTT	2654	0.10527639416846524	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2527	0.10023867673839926	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCGA	30	2.1665364E-6	45.000004	42
CGTTAGT	30	2.1665364E-6	45.000004	25
CGTTTTT	7410	0.0	42.14575	1
CTAGACG	50	1.0822987E-9	40.5	1
TCCCGAA	45	1.9299478E-8	40.000004	29
CGTAAGG	425	0.0	39.705883	2
TTACGAG	85	0.0	39.705883	1
GTATGCG	160	0.0	39.375004	1
GGGCGAT	5720	0.0	39.375	7
TACGGGA	625	0.0	39.24	4
AGGGCGA	3090	0.0	38.73786	6
TCGTTAG	105	0.0	38.57143	1
CGTAGCA	35	6.2512554E-6	38.57143	15
TACGTCC	35	6.2512554E-6	38.57143	24
TCACGAC	175	0.0	38.571426	25
CACGACG	175	0.0	38.571426	26
TTACGGG	655	0.0	38.129772	3
TTGATCC	1475	0.0	37.52542	17
CGGGTAC	270	0.0	37.500004	6
TAATTCG	30	1.1403084E-4	37.500004	28