SRR1547013_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547013_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1323275
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6009	0.4541006215639228	No Hit
GAGAGCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTT	2122	0.16035971358938997	No Hit
TAGAGCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTT	1514	0.11441310385218492	No Hit
GAGCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCT	1509	0.11403525344316186	No Hit
AAGAGCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTT	1416	0.1070072358353328	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGATA	20	7.0336735E-4	45.000004	12
CGTACCG	20	7.0336735E-4	45.000004	37
CGATCGA	20	7.0336735E-4	45.000004	10
GTATCGT	25	3.891127E-5	45.0	31
TTAACGG	50	2.1827873E-11	45.0	2
ATACGAG	95	0.0	42.63158	1
GCGATAA	190	0.0	41.44737	9
CGTTTTT	4270	0.0	41.206085	1
AATACGG	55	6.184564E-11	40.909092	2
CGTAAGG	215	0.0	40.813957	2
AACACGT	760	0.0	39.967106	41
ACACGAC	775	0.0	39.48387	26
GACACGA	775	0.0	39.48387	25
CGGGTAT	80	0.0	39.375004	6
TACGTAG	80	0.0	39.375004	1
ACACGTG	785	0.0	38.980892	42
CGTATGG	145	0.0	38.793102	2
ACGATTC	35	6.249007E-6	38.571426	26
TACGATT	35	6.249007E-6	38.571426	25
AGACACG	825	0.0	38.454544	24