##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547009_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1879602 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.595004687162493 31.0 31.0 33.0 30.0 34.0 2 31.967684648132956 31.0 31.0 34.0 30.0 34.0 3 32.07075540460161 33.0 31.0 34.0 30.0 34.0 4 35.75096323583397 37.0 35.0 37.0 35.0 37.0 5 35.697818474336586 37.0 35.0 37.0 33.0 37.0 6 35.747561451839275 37.0 35.0 37.0 33.0 37.0 7 36.09289785816359 37.0 35.0 37.0 35.0 37.0 8 36.02110659597085 37.0 35.0 37.0 35.0 37.0 9 37.79101213980407 39.0 38.0 39.0 35.0 39.0 10 37.3029205118956 39.0 37.0 39.0 34.0 39.0 11 37.06675402558627 39.0 37.0 39.0 33.0 39.0 12 36.61323620638837 39.0 35.0 39.0 33.0 39.0 13 36.47648065920338 39.0 35.0 39.0 32.0 39.0 14 37.54842035707559 40.0 35.0 41.0 32.0 41.0 15 37.636242672650916 40.0 35.0 41.0 33.0 41.0 16 37.71013065531958 40.0 35.0 41.0 33.0 41.0 17 37.630250978664634 40.0 35.0 41.0 33.0 41.0 18 37.56234298537669 39.0 36.0 41.0 33.0 41.0 19 37.50635294067574 39.0 35.0 41.0 33.0 41.0 20 37.370834357486316 39.0 35.0 41.0 32.0 41.0 21 37.29387604397101 39.0 35.0 41.0 32.0 41.0 22 37.211589474793065 39.0 35.0 41.0 32.0 41.0 23 37.11291486176329 39.0 35.0 41.0 32.0 41.0 24 37.010048935891746 39.0 35.0 41.0 32.0 41.0 25 36.88448511972216 39.0 35.0 41.0 31.0 41.0 26 36.731080303170565 38.0 35.0 41.0 31.0 41.0 27 36.64688481923301 38.0 35.0 41.0 31.0 41.0 28 36.66889479794126 38.0 35.0 41.0 31.0 41.0 29 36.66628201076611 38.0 35.0 41.0 31.0 41.0 30 36.56284734747037 38.0 35.0 41.0 31.0 41.0 31 36.441828642446644 38.0 35.0 41.0 31.0 41.0 32 36.32257041650307 38.0 35.0 41.0 30.0 41.0 33 36.17252641782675 38.0 35.0 41.0 30.0 41.0 34 35.99259098468718 38.0 35.0 41.0 30.0 41.0 35 35.879769759768294 38.0 35.0 41.0 29.0 41.0 36 35.7487122273758 38.0 35.0 41.0 29.0 41.0 37 35.68409801649498 38.0 35.0 41.0 28.0 41.0 38 35.549549319483596 38.0 35.0 40.0 28.0 41.0 39 35.45068956087512 38.0 35.0 40.0 28.0 41.0 40 35.304203762285844 38.0 34.0 40.0 27.0 41.0 41 35.209680560033455 37.0 34.0 40.0 27.0 41.0 42 35.11651349594223 37.0 34.0 40.0 27.0 41.0 43 34.981750391838276 37.0 34.0 40.0 26.0 41.0 44 34.82309871983537 37.0 34.0 40.0 26.0 41.0 45 34.6925891757936 36.0 34.0 40.0 25.0 41.0 46 34.62402359648479 36.0 34.0 40.0 25.0 41.0 47 34.530989539274806 36.0 34.0 40.0 25.0 41.0 48 34.411539783422235 36.0 34.0 40.0 25.0 41.0 49 34.29276144630619 36.0 34.0 40.0 24.0 41.0 50 34.1575780404575 35.0 34.0 40.0 24.0 41.0 51 33.78959269036743 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 0.0 10 2.0 11 1.0 12 6.0 13 8.0 14 26.0 15 70.0 16 158.0 17 419.0 18 831.0 19 1679.0 20 2745.0 21 4422.0 22 6448.0 23 9857.0 24 14092.0 25 19837.0 26 25451.0 27 29832.0 28 33205.0 29 37619.0 30 43562.0 31 51936.0 32 63018.0 33 81061.0 34 137561.0 35 212138.0 36 146660.0 37 192065.0 38 278866.0 39 485714.0 40 311.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.00980420323025 24.43086355515689 26.729754490578323 12.829577751034527 2 32.44506017763335 25.511198647373217 28.004226426658406 14.03951474833502 3 30.491295497663867 25.644045920359737 29.75768274347442 14.106975838501981 4 25.729063918850905 29.218366441406214 29.214535843226386 15.838033796516497 5 24.29477091426802 32.0000191529909 28.306737277359783 15.398472655381298 6 22.14692259318728 41.52214138950693 25.41107106717273 10.919864950133059 7 87.61615490939039 3.6156590597371148 6.9309353788727615 1.837250651999732 8 87.11094157167315 3.267553450145297 6.588628869303183 3.032876108878369 9 81.67287542788314 4.913327395906155 9.577559504618531 3.8362376715921775 10 43.733194580554816 25.422935280979697 15.529457832030397 15.314412306435084 11 35.31311415927414 25.7669442786292 22.29541147540809 16.624530086688566 12 30.480867758174334 22.226886330191178 27.006462006318362 20.285783905316126 13 24.393781236666058 28.61776056846077 28.76534500388912 18.22311319098405 14 21.49747659344904 29.63755092833483 29.39047734573596 19.474495132480175 15 20.87186542682972 23.76354143057945 35.930851318523814 19.43374182406701 16 23.872394262189548 21.41357585276032 34.35184682714745 20.362183057902683 17 23.10478494915413 22.665330213523927 28.142340772142187 26.087544065179756 18 25.355846610080217 22.574672723268012 30.05455410241104 22.014926564240728 19 27.596054909496797 25.70655915454442 25.147823847814593 21.549562088144192 20 29.658991637591363 24.76737096470423 24.38915259719877 21.18448480050564 21 26.785244961433325 26.568124528490607 26.397822517745777 20.248807992330292 22 26.103770904691526 22.971990878920113 25.65830425802909 25.26593395835927 23 24.164849792668875 27.135957505897522 24.98709833251933 23.71209436891427 24 23.6138288850512 24.7568900224622 30.447935254378322 21.18134583810828 25 24.347335233735652 24.751942166479925 28.750927057962272 22.14979554182215 26 22.31030824610742 27.187723784077694 26.401919129688096 24.100048840126792 27 22.795410943380567 25.830521567863833 26.658143585716548 24.715923903039048 28 21.86638447926742 27.0832335781724 29.138775123669795 21.911606818890384 29 23.268755832351744 24.482204211317075 27.949480794338378 24.299559161992804 30 25.57504195037034 25.54179023005934 27.54359699553416 21.33957082403615 31 27.671549615290896 26.076477892660254 24.178150480793274 22.073822011255576 32 28.73491302946049 25.06344428235339 24.631810351340334 21.569832336845778 33 27.455865656665612 25.843822255988236 23.800357735307795 22.899954352038357 34 24.046846087629188 27.128828337062842 27.061314044143387 21.763011531164576 35 23.972894261657522 26.752950890667282 27.806737809387304 21.46741703828789 36 27.593926799396897 28.295777510345278 24.01380717832818 20.096488511929653 37 24.39335561464608 28.067058877358082 26.44746068582604 21.0921248221698 38 24.091376791469685 29.254916732372067 25.328713206306443 21.32499326985181 39 24.053124012423908 27.02040112747273 25.596642267884373 23.32983259221899 40 25.808070006309848 25.219434752676364 26.47975475659209 22.492740484421702 41 21.870481091209733 24.568126656600704 27.194586939149882 26.366805313039677 42 24.43575820838667 25.480500659182105 25.781043008041067 24.30269812439016 43 23.269021846114228 24.29594137482297 27.967622932940056 24.467413846122742 44 23.582545666582604 25.590949573367126 27.161601232601367 23.664903527448896 45 22.659424707996692 26.077329136700218 25.97757397576721 25.28567217953588 46 24.74784555453761 25.773275406176417 26.30679260822238 23.172086431063597 47 23.50034741397381 25.23018170868088 28.043170841486653 23.226300035858653 48 24.191397966165177 24.58712003924235 28.415802919979864 22.805679074612602 49 23.941823854198923 23.96709516163528 28.49661790102373 23.59446308314207 50 23.526203951687645 25.380532687239103 28.191819331964957 22.90144402910829 51 22.962946410995517 26.040619237476868 26.2752433759913 24.72119097553631 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1171.0 1 1929.5 2 2688.0 3 9497.5 4 16307.0 5 11425.0 6 6543.0 7 6860.0 8 7177.0 9 7704.0 10 8231.0 11 8444.0 12 8657.0 13 8697.5 14 8738.0 15 8613.0 16 8488.0 17 8434.0 18 8380.0 19 8419.5 20 8459.0 21 8315.0 22 8171.0 23 8354.5 24 8538.0 25 8887.5 26 10959.0 27 12681.0 28 14222.0 29 15763.0 30 17665.5 31 19568.0 32 24488.5 33 29409.0 34 32395.5 35 35382.0 36 39756.0 37 44130.0 38 48927.5 39 53725.0 40 65399.5 41 77074.0 42 91958.5 43 106843.0 44 121152.0 45 135461.0 46 144761.5 47 154062.0 48 148828.5 49 143595.0 50 138440.5 51 133286.0 52 128217.5 53 123149.0 54 117274.5 55 111400.0 56 106919.0 57 102438.0 58 98354.5 59 94271.0 60 91806.5 61 89342.0 62 80014.5 63 70687.0 64 66830.5 65 62974.0 66 53990.5 67 45007.0 68 40042.5 69 35078.0 70 29261.5 71 23445.0 72 20480.0 73 17515.0 74 16083.0 75 12089.0 76 9527.0 77 6910.0 78 4293.0 79 3175.0 80 2057.0 81 1546.0 82 1035.0 83 781.0 84 527.0 85 363.0 86 199.0 87 156.0 88 113.0 89 91.0 90 69.0 91 46.0 92 23.0 93 24.5 94 26.0 95 17.0 96 8.0 97 5.0 98 2.0 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1879602.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.949758256563218 #Duplication Level Percentage of deduplicated Percentage of total 1 77.58001490838198 18.58022602596319 2 7.1032487092448955 3.4024217884532 3 2.462682306015058 1.7694193767532889 4 1.372751979789273 1.315083122486866 5 0.9094435613923633 1.0890476721667506 6 0.7070824978822182 1.0160672935035597 7 0.5887493595113098 0.9870283383801609 8 0.4543444267793113 0.8705151349265035 9 0.4056728716004497 0.8744190485468922 >10 6.737162761018986 41.21260386510039 >50 1.592644560486959 24.283432502752138 >100 0.08193685282789094 3.09914307147718 >500 0.002020360296017088 0.2995701643035978 >1k 0.002020360296017088 0.6929576180382399 >5k 2.2448447733523205E-4 0.5080649771480616 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9450 0.5027660111023503 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09406246641576249 0.0 2 0.0 0.0 0.0 0.30522419107874965 0.0 3 0.0 0.0 0.0 0.4510529356746801 0.0 4 0.0 0.0 0.0 0.7788350938124134 0.0 5 0.0 0.0 0.0 1.2495730479112068 0.0 6 0.0 0.0 0.0 2.158648479837753 0.0 7 0.0 0.0 0.0 2.5388885519381232 0.0 8 0.0 0.0 0.0 3.594377958738073 0.0 9 0.0 0.0 0.0 4.0771397349013245 0.0 10 0.0 0.0 0.0 4.809741636793321 0.0 11 0.0 0.0 0.0 5.455676254866722 0.0 12 0.0 0.0 0.0 5.951791921906872 0.0 13 0.0 0.0 0.0 6.206526700865396 0.0 14 0.0 0.0 0.0 6.334106901354648 0.0 15 0.0 0.0 0.0 6.483872649635401 0.0 16 0.0 0.0 0.0 6.756217539670632 0.0 17 0.0 0.0 0.0 7.041118279295298 0.0 18 0.0 0.0 0.0 7.409760151351191 0.0 19 0.0 0.0 0.0 7.600172802540112 0.0 20 0.0 0.0 0.0 7.795267295948824 0.0 21 0.0 0.0 0.0 8.037339819812917 0.0 22 0.0 0.0 0.0 8.288190797839118 0.0 23 0.0 0.0 0.0 8.572772320948797 0.0 24 0.0 0.0 0.0 8.798777613558615 0.0 25 0.0 0.0 0.0 8.991158766589948 0.0 26 0.0 0.0 0.0 9.176091534271617 0.0 27 0.0 0.0 0.0 9.378368399267504 0.0 28 5.3202752497603214E-5 0.0 0.0 9.580751669768388 0.0 29 5.3202752497603214E-5 0.0 0.0 9.796808047661154 0.0 30 5.3202752497603214E-5 0.0 0.0 10.068833721181399 0.0 31 5.3202752497603214E-5 0.0 0.0 10.296381893613647 0.0 32 5.3202752497603214E-5 0.0 0.0 10.532176492683025 0.0 33 5.3202752497603214E-5 0.0 0.0 10.751212224715658 0.0 34 5.3202752497603214E-5 0.0 0.0 10.977483531087964 0.0 35 5.3202752497603214E-5 0.0 0.0 11.228600522876652 0.0 36 5.3202752497603214E-5 0.0 0.0 11.443220426451983 0.0 37 5.3202752497603214E-5 0.0 0.0 11.670662193379236 0.0 38 5.3202752497603214E-5 0.0 0.0 11.919544669563024 0.0 39 5.3202752497603214E-5 0.0 0.0 12.244719892828375 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCACG 35 1.2124838E-7 45.0 1 CGTTTTT 6055 0.0 40.949627 1 CTCACGA 165 0.0 40.90909 24 ACACGAC 2000 0.0 40.725002 26 CACGACC 2000 0.0 40.612503 27 AGGGCGA 2460 0.0 40.15244 6 GACACGA 2045 0.0 39.938873 25 AGACACG 2045 0.0 39.82885 24 ACGACCA 2045 0.0 39.82885 28 CGAGACA 2065 0.0 39.552055 22 CACGTGA 1920 0.0 39.25781 43 CGACCAA 2085 0.0 39.172657 29 TCAAGCG 2075 0.0 39.144577 17 AACACGT 1955 0.0 39.130432 41 CATACGA 305 0.0 39.098362 18 AGGGTAC 855 0.0 38.94737 6 TAAACGG 110 0.0 38.863636 2 CGTAAGG 325 0.0 38.76923 2 GTCAAGC 2095 0.0 38.663483 16 AAACACG 2050 0.0 38.634148 40 >>END_MODULE