SRR1547003_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547003_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2108095
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9670	0.458707980427827	No Hit
GCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC	2477	0.11749944855426345	No Hit
GAGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCT	2448	0.1161237989749039	No Hit
AAGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCT	2352	0.1115699245052998	No Hit
AAGAGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTT	2240	0.1062570709574284	No Hit
GAGAGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTT	2212	0.10492885757046053	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2211	0.10488142137806881	No Hit
CTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCT	2196	0.1041698784921932	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTCA	20	7.034626E-4	45.000004	18
TAATTCG	20	7.034626E-4	45.000004	21
TCGAATC	20	7.034626E-4	45.000004	21
GTCGAAC	30	2.1663673E-6	44.999996	43
CGAAACG	30	2.1663673E-6	44.999996	13
CGAATAT	105	0.0	42.857143	14
CGTTTTT	6385	0.0	40.982773	1
ATCGTAG	105	0.0	40.714287	1
GCGTAAG	185	0.0	40.135136	1
CGTTAGG	265	0.0	39.905663	2
TATACGG	160	0.0	39.375004	2
TAGCATA	710	0.0	38.661972	30
CAAATCG	35	6.2507697E-6	38.57143	30
GGGCGAT	4490	0.0	38.435413	7
CGCCAGT	135	0.0	38.333332	26
ATAGACG	100	0.0	38.25	1
ATTGGGA	1125	0.0	38.2	4
CTATGCG	65	9.094947E-12	38.07692	1
GCGTTAG	160	0.0	37.968754	1
TGCTACG	95	0.0	37.894737	1