SRR1547001_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547001_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1060421
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5072	0.47830059947888626	No Hit
GAGCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCT	3364	0.31723249539569665	TruSeq Adapter, Index 14 (95% over 23bp)
AAGCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCT	2932	0.27649395853156433	Illumina PCR Primer Index 3 (95% over 21bp)
AAGAGCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTT	2663	0.25112667516014864	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2508	0.23650983901676784	No Hit
TAGAGCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTT	2149	0.20265536046532462	No Hit
GAGAGCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTT	2049	0.19322514359862733	TruSeq Adapter, Index 14 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTGC	1601	0.1509777720358235	TruSeq Adapter, Index 14 (96% over 25bp)
AGAGCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTC	1195	0.11269109155703254	TruSeq Adapter, Index 14 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTGCT	1191	0.11231388288236466	Illumina PCR Primer Index 3 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTGC	1158	0.10920191131635454	TruSeq Adapter, Index 14 (96% over 25bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGTA	20	7.0330384E-4	45.000004	33
CGGAATT	20	7.0330384E-4	45.000004	39
AGTCAAC	20	7.0330384E-4	45.000004	26
TAGACAA	20	7.0330384E-4	45.000004	34
GGGTATA	40	6.8139343E-9	45.000004	7
ATTACCG	20	7.0330384E-4	45.000004	16
CATCTCG	20	7.0330384E-4	45.000004	1
ATTCGGT	20	7.0330384E-4	45.000004	38
AAGCGTG	20	7.0330384E-4	45.000004	1
ATATGCG	40	6.8139343E-9	45.000004	1
GACCCAA	20	7.0330384E-4	45.000004	24
GTAATCG	20	7.0330384E-4	45.000004	35
TACGCTT	20	7.0330384E-4	45.000004	10
CACTCGA	20	7.0330384E-4	45.000004	38
GTTGTGC	20	7.0330384E-4	45.000004	22
TACGATT	20	7.0330384E-4	45.000004	17
TAATTCG	20	7.0330384E-4	45.000004	34
TACGAGT	20	7.0330384E-4	45.000004	14
TACGACC	35	1.2118107E-7	45.000004	32
CGCTAGC	20	7.0330384E-4	45.000004	29