##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547001_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1060421 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.675286513563954 31.0 31.0 33.0 30.0 34.0 2 32.038810057514894 33.0 31.0 34.0 30.0 34.0 3 32.09003310949142 33.0 31.0 34.0 30.0 34.0 4 35.76333267636156 37.0 35.0 37.0 35.0 37.0 5 35.72460088964666 37.0 35.0 37.0 33.0 37.0 6 35.78219311009495 37.0 35.0 37.0 33.0 37.0 7 36.07837453237912 37.0 35.0 37.0 35.0 37.0 8 35.99512269183654 37.0 35.0 37.0 35.0 37.0 9 37.78427530197912 39.0 38.0 39.0 35.0 39.0 10 37.48227260682314 39.0 37.0 39.0 35.0 39.0 11 37.13879110277899 39.0 37.0 39.0 34.0 39.0 12 36.129618330832756 37.0 35.0 39.0 33.0 39.0 13 35.66832135538621 37.0 35.0 39.0 31.0 39.0 14 36.616188287482046 38.0 35.0 41.0 31.0 41.0 15 36.89164963726671 38.0 35.0 41.0 32.0 41.0 16 37.08809142783856 38.0 35.0 41.0 33.0 41.0 17 37.04269530686397 38.0 35.0 41.0 33.0 41.0 18 36.962384750962116 38.0 35.0 40.0 33.0 41.0 19 36.82503081323361 37.0 35.0 40.0 32.0 41.0 20 36.62625032887881 37.0 35.0 40.0 32.0 41.0 21 36.527219849474875 36.0 35.0 40.0 32.0 41.0 22 36.431820946586306 36.0 35.0 40.0 32.0 41.0 23 36.384549155476925 36.0 35.0 40.0 32.0 41.0 24 36.271314883428374 36.0 35.0 40.0 32.0 41.0 25 36.152281971028486 35.0 35.0 40.0 32.0 41.0 26 35.97489770572254 35.0 35.0 40.0 31.0 41.0 27 35.912399886460186 35.0 35.0 40.0 31.0 41.0 28 35.93731734848706 36.0 35.0 40.0 31.0 41.0 29 35.9570236726734 36.0 35.0 40.0 31.0 41.0 30 35.864217136401486 36.0 35.0 40.0 31.0 41.0 31 35.61460495407013 36.0 35.0 40.0 31.0 41.0 32 35.31442606285617 35.0 34.0 40.0 30.0 41.0 33 35.08586495363634 35.0 34.0 40.0 29.0 41.0 34 34.864633951986995 35.0 34.0 40.0 28.0 41.0 35 34.67147576292812 35.0 34.0 40.0 27.0 41.0 36 34.46324714429458 35.0 34.0 40.0 25.0 41.0 37 34.31821418097152 35.0 34.0 40.0 24.0 41.0 38 34.16154998816508 35.0 34.0 40.0 23.0 41.0 39 34.02009202005618 35.0 34.0 40.0 23.0 41.0 40 33.72644261100073 35.0 33.0 40.0 22.0 41.0 41 33.61186830513541 35.0 34.0 40.0 21.0 41.0 42 33.46182601061277 35.0 33.0 40.0 20.0 41.0 43 33.27465318019919 35.0 33.0 40.0 18.0 41.0 44 33.04358740537956 35.0 33.0 39.0 18.0 41.0 45 32.91698202883572 35.0 33.0 39.0 18.0 41.0 46 32.85598738614192 35.0 33.0 39.0 18.0 41.0 47 32.78851607050407 35.0 33.0 39.0 18.0 41.0 48 32.69250608956254 35.0 33.0 39.0 17.0 41.0 49 32.69131411015059 35.0 33.0 39.0 17.0 41.0 50 32.519665302742965 35.0 33.0 38.0 15.0 41.0 51 32.14014905400779 35.0 32.0 38.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 2.0 13 6.0 14 14.0 15 32.0 16 112.0 17 286.0 18 593.0 19 1166.0 20 2008.0 21 3290.0 22 5172.0 23 7936.0 24 12304.0 25 16731.0 26 20465.0 27 21660.0 28 22644.0 29 25379.0 30 27806.0 31 32074.0 32 38455.0 33 51014.0 34 100287.0 35 215183.0 36 65545.0 37 76944.0 38 111376.0 39 201707.0 40 227.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.106890565162328 26.42705114289513 28.380803473337473 14.085254818605064 2 29.930093802367175 29.592492038539408 27.42505099389771 13.05236316519571 3 28.88692321257312 26.91336742671071 30.483270323767638 13.716439036948533 4 22.30350021359441 32.170619027725785 30.523160141113763 15.002720617566043 5 23.663714694446828 32.70059721563417 29.226788228448893 14.408899861470115 6 21.13933994140063 40.92827282749021 26.060875821961275 11.871511409147876 7 81.91680474075862 6.487046182601061 9.503678256088856 2.09247082055146 8 81.06204988396118 5.749697525794001 7.855653556464838 5.33259903377998 9 76.8153403223814 7.216662061577431 11.926583875649388 4.041413740391788 10 53.56014262259989 18.969824249048255 13.726529368995898 13.743503759355955 11 46.47852126655357 20.566077058074107 19.821750040785687 13.133651634586641 12 40.72552316485622 20.226777855210337 23.335826053991767 15.711872925941679 13 19.862865786324488 43.35966564223078 24.5475146191937 12.229953952251039 14 13.363654623965388 45.27003897508631 27.705128434838617 13.661177966109687 15 10.734793068036186 24.937736993137634 50.64054748067042 13.68692245815577 16 12.505504889095933 19.047340631692506 49.53042235112281 18.91673212808875 17 13.797067391158793 21.28456528114777 27.506999578469305 37.41136774922413 18 18.830917154601803 23.81195770359131 34.98384132339891 22.37328381840797 19 25.66867310247534 28.033205679631013 25.243181717449957 21.05493950044369 20 28.713784430900557 25.4414991781566 24.132679379227685 21.712037011715157 21 19.751683529466128 32.30613124410022 27.357530641132154 20.5846545853015 22 20.654155283609057 27.216077388131694 24.636441564246653 27.493325764012592 23 17.652800161445313 33.11448943391351 22.20174817360275 27.030962231038423 24 19.378624150219583 25.84313211450924 37.808096972806084 16.970146762465095 25 16.513158453104946 26.053143044130582 34.69914307619332 22.734555426571145 26 14.566478785312626 36.161581107880735 27.67730929508186 21.594630811724777 27 17.044928382218004 34.2514906815312 27.062836364047865 21.640744572202927 28 13.552636169974 31.90091482533824 36.55944195748669 17.987007047201065 29 13.861004261515003 26.323130153024128 35.97788048331748 23.837985102143396 30 17.603385825063818 32.142139772788354 30.873964208554906 19.380510193592922 31 27.504453419915297 28.13212865456267 24.43755829052801 19.925859634994026 32 28.721988719574583 27.66325827195048 25.977229798353672 17.637523210121266 33 28.681815995722452 27.020023179473057 23.797906680459928 20.500254144344556 34 19.60296900947831 27.494834598711265 27.964176492166793 24.93801989964363 35 19.877294018130534 26.10840411496943 30.350115661609873 23.664186205290164 36 29.16039950170734 23.56111393493716 27.580178061354875 19.698308502000618 37 22.300011033353734 28.973209696903403 27.99058109939354 20.736198170349322 38 21.934873036275214 31.213452015756005 24.179358952717838 22.672315995250944 39 21.433939916316255 29.501113237101112 25.519864280318856 23.545082566263776 40 25.884436464385374 24.6097540505139 24.600323833647202 24.905485651453528 41 17.605649077111828 21.79294827243142 28.33214355430532 32.26925909615144 42 22.934476024145127 24.94490395795632 24.37852513294248 27.74209488495607 43 22.23475393263619 23.226529840506743 27.67240558231118 26.866310644545894 44 21.083230151043782 27.232297361142415 27.31679210426802 24.367680383545782 45 18.882311836525304 31.501639443202272 23.22162612773606 26.39442259253636 46 24.249425464037397 27.733984898450707 26.79680994623833 21.219779691273562 47 23.115819094491716 23.93615365972571 27.893449865666557 25.05457738011601 48 23.795266219737254 19.977631525592194 32.10668215736957 24.120420097300975 49 21.917238530734494 18.77150678834161 33.72632190422483 25.584932776699066 50 20.099658531847258 27.627140541351032 28.866365339803718 23.406835586997996 51 18.09743488671009 29.56278685540931 25.44046185430126 26.89931640357933 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1451.0 1 1640.5 2 1830.0 3 5312.0 4 8794.0 5 6651.0 6 4508.0 7 5433.0 8 6358.0 9 7466.0 10 8574.0 11 9189.0 12 9804.0 13 10087.5 14 10371.0 15 10305.0 16 10239.0 17 10013.5 18 9788.0 19 9508.5 20 9229.0 21 8773.5 22 8318.0 23 8042.5 24 7767.0 25 7031.5 26 6357.0 27 6418.0 28 6139.5 29 5861.0 30 7073.5 31 8286.0 32 9326.5 33 10367.0 34 11659.0 35 12951.0 36 14899.5 37 16848.0 38 20895.5 39 24943.0 40 40493.0 41 56043.0 42 73600.5 43 91158.0 44 96717.0 45 102276.0 46 106722.5 47 111169.0 48 110757.5 49 110346.0 50 103795.5 51 97245.0 52 83318.5 53 69392.0 54 58610.0 55 47828.0 56 42442.0 57 37056.0 58 35486.0 59 33916.0 60 32283.0 61 30650.0 62 28406.0 63 26162.0 64 22359.0 65 18556.0 66 16066.5 67 13577.0 68 10601.5 69 7626.0 70 7073.0 71 6520.0 72 5519.0 73 4518.0 74 3789.0 75 2695.5 76 2331.0 77 1669.0 78 1007.0 79 777.0 80 547.0 81 361.0 82 175.0 83 194.0 84 213.0 85 114.0 86 15.0 87 14.5 88 14.0 89 12.5 90 11.0 91 8.0 92 5.0 93 3.5 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1060421.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.061837711009368 #Duplication Level Percentage of deduplicated Percentage of total 1 81.34484598728051 20.386513287602757 2 7.66159354754517 3.8402722819258717 3 2.6070113130816397 1.9600948331765247 4 1.3243482653069216 1.3276240519191538 5 0.7844734982765328 0.9830173751197124 6 0.5196004791156346 0.7813285729295248 7 0.36180433299335946 0.6347237033633695 8 0.3113642291165759 0.624268782330653 9 0.25641960290451166 0.5783711826522903 >10 2.7058840817286858 16.469433710654453 >50 1.3805791456519076 25.539900078940082 >100 0.7348672169868102 23.80458302177209 >500 0.002276305266866733 0.411413995475383 >1k 0.004552610533733466 2.17620603846558 >5k 3.793842111444555E-4 0.48224908367255426 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5072 0.47830059947888626 No Hit GAGCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCT 3364 0.31723249539569665 TruSeq Adapter, Index 14 (95% over 23bp) AAGCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCT 2932 0.27649395853156433 Illumina PCR Primer Index 3 (95% over 21bp) AAGAGCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTT 2663 0.25112667516014864 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2508 0.23650983901676784 No Hit TAGAGCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTT 2149 0.20265536046532462 No Hit GAGAGCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTT 2049 0.19322514359862733 TruSeq Adapter, Index 14 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTGC 1601 0.1509777720358235 TruSeq Adapter, Index 14 (96% over 25bp) AGAGCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTC 1195 0.11269109155703254 TruSeq Adapter, Index 14 (95% over 22bp) CTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTGCT 1191 0.11231388288236466 Illumina PCR Primer Index 3 (95% over 24bp) GCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTGC 1158 0.10920191131635454 TruSeq Adapter, Index 14 (96% over 25bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.430216866697284E-5 0.0 0.0 0.12825094938708306 0.0 2 9.430216866697284E-5 0.0 0.0 0.558740349351814 0.0 3 9.430216866697284E-5 0.0 0.0 0.8885150331802181 0.0 4 9.430216866697284E-5 0.0 0.0 2.009484912124524 0.0 5 9.430216866697284E-5 0.0 0.0 3.1052761120347485 0.0 6 9.430216866697284E-5 0.0 0.0 5.06562959428378 0.0 7 9.430216866697284E-5 0.0 0.0 5.750829151818004 0.0 8 9.430216866697284E-5 0.0 0.0 7.473069658182929 0.0 9 9.430216866697284E-5 0.0 0.0 8.19391543547327 0.0 10 9.430216866697284E-5 0.0 0.0 9.391552977543824 0.0 11 9.430216866697284E-5 0.0 0.0 10.678211766836002 0.0 12 9.430216866697284E-5 0.0 0.0 11.686867762897943 0.0 13 9.430216866697284E-5 0.0 0.0 12.136877711776737 0.0 14 9.430216866697284E-5 0.0 0.0 12.318597990797995 0.0 15 9.430216866697284E-5 0.0 0.0 12.534361352708029 0.0 16 9.430216866697284E-5 0.0 0.0 12.98446560375549 0.0 17 9.430216866697284E-5 0.0 0.0 13.417218255768228 0.0 18 9.430216866697284E-5 0.0 0.0 14.053474987764293 0.0 19 9.430216866697284E-5 0.0 0.0 14.313654671116472 0.0 20 9.430216866697284E-5 0.0 0.0 14.594580831575383 0.0 21 9.430216866697284E-5 0.0 0.0 14.914830996368423 0.0 22 9.430216866697284E-5 0.0 0.0 15.201792495622021 0.0 23 9.430216866697284E-5 0.0 0.0 15.541940418003794 0.0 24 9.430216866697284E-5 0.0 0.0 15.77382945075588 0.0 25 9.430216866697284E-5 0.0 0.0 15.946968232428441 0.0 26 9.430216866697284E-5 0.0 0.0 16.13198908735304 0.0 27 9.430216866697284E-5 0.0 0.0 16.293811608785568 0.0 28 9.430216866697284E-5 0.0 0.0 16.45261646082075 0.0 29 9.430216866697284E-5 0.0 0.0 16.620002810204625 0.0 30 9.430216866697284E-5 0.0 0.0 16.859247412112737 0.0 31 9.430216866697284E-5 0.0 0.0 17.076142400046773 0.0 32 9.430216866697284E-5 0.0 0.0 17.241831310394645 0.0 33 9.430216866697284E-5 0.0 0.0 17.41827066797055 0.0 34 9.430216866697284E-5 0.0 0.0 17.59216386699245 0.0 35 9.430216866697284E-5 0.0 0.0 17.826599058298545 0.0 36 9.430216866697284E-5 0.0 0.0 18.00586748093446 0.0 37 9.430216866697284E-5 0.0 0.0 18.178534751763685 0.0 38 9.430216866697284E-5 0.0 0.0 18.352993763797585 0.0 39 9.430216866697284E-5 0.0 0.0 18.545275885709543 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGTA 20 7.0330384E-4 45.000004 33 CGGAATT 20 7.0330384E-4 45.000004 39 AGTCAAC 20 7.0330384E-4 45.000004 26 TAGACAA 20 7.0330384E-4 45.000004 34 GGGTATA 40 6.8139343E-9 45.000004 7 ATTACCG 20 7.0330384E-4 45.000004 16 CATCTCG 20 7.0330384E-4 45.000004 1 ATTCGGT 20 7.0330384E-4 45.000004 38 AAGCGTG 20 7.0330384E-4 45.000004 1 ATATGCG 40 6.8139343E-9 45.000004 1 GACCCAA 20 7.0330384E-4 45.000004 24 GTAATCG 20 7.0330384E-4 45.000004 35 TACGCTT 20 7.0330384E-4 45.000004 10 CACTCGA 20 7.0330384E-4 45.000004 38 GTTGTGC 20 7.0330384E-4 45.000004 22 TACGATT 20 7.0330384E-4 45.000004 17 TAATTCG 20 7.0330384E-4 45.000004 34 TACGAGT 20 7.0330384E-4 45.000004 14 TACGACC 35 1.2118107E-7 45.000004 32 CGCTAGC 20 7.0330384E-4 45.000004 29 >>END_MODULE