SRR1547000_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547000_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3937585
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	89724	2.2786555718797183	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTT	6843	0.1737867246040403	No Hit
CTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTGCT	5947	0.15103166026892118	TruSeq Adapter, Index 23 (96% over 26bp)
CGTTCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTC	5541	0.14072077174207032	TruSeq Adapter, Index 23 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTGC	4686	0.1190069547705002	Illumina PCR Primer Index 7 (95% over 23bp)
CGTTTTCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCT	4463	0.11334358496388015	No Hit
CGCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTG	4245	0.10780719654305876	TruSeq Adapter, Index 23 (95% over 24bp)
GAGAGCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTT	4017	0.10201684535064005	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	43290	44.14241	1
CGTTCGG	455	42.52747	45
TCGTTAG	180	42.5	1
TCGACGG	135	41.666664	2
GCGCGAC	510	41.02941	9
ACGCCGA	105	40.714287	12
CGTTAGG	505	40.099007	2
AGGGCGA	4575	39.88525	6
GTTTTTT	49290	38.887707	2
CGCGACC	540	38.75	10
CGTTCGA	135	38.333332	14
TACGGGA	1205	38.278008	4
TATTACG	100	38.25	1
TAGGGCG	1585	38.18612	5
GGCGCGA	555	38.10811	8
AGGGATT	6730	38.079494	6
CGACGGT	130	38.076927	28
TACGAAT	255	37.941177	12
GACCGAT	2495	37.51503	9
TAATACG	90	37.5	1