SRR1546999_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546999_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	4613047
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26078	0.5653096532508773	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	5002	0.1084315854575078	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATTACG	75	45.000004	1
CAATACG	70	41.785717	1
CGTTTTT	14745	40.910477	1
AGGGTAC	1930	38.937824	6
TAGGGTA	1565	38.530354	5
GGCGATA	2080	38.293266	8
GGGCGAT	10560	38.18182	7
ACGGGTA	365	37.602737	5
ACGGGAT	1085	37.53456	5
AACACGT	2225	37.415733	41
AAGGGAT	4025	37.341614	5
CACGACC	2405	37.32848	27
CGTATGG	585	37.307693	2
GCGATAA	525	37.285717	9
AGGGCGA	5305	37.0688	6
CGCATGA	85	37.058823	11
CGTAAGG	735	37.040817	2
TAAGGGA	3720	36.83468	4
ACAACGA	1170	36.73077	13
TTGATCC	2665	36.726078	17