##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546999_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4613047 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.59809687609946 31.0 31.0 33.0 30.0 34.0 2 31.974274920676073 31.0 31.0 34.0 30.0 34.0 3 32.08080234170603 33.0 31.0 34.0 30.0 34.0 4 35.75566886702 37.0 35.0 37.0 35.0 37.0 5 35.69802453779465 37.0 35.0 37.0 33.0 37.0 6 35.747614754412865 37.0 35.0 37.0 33.0 37.0 7 36.093478345223886 37.0 35.0 37.0 35.0 37.0 8 36.01933212473231 37.0 35.0 37.0 35.0 37.0 9 37.785819437781576 39.0 38.0 39.0 35.0 39.0 10 37.30928906642399 39.0 37.0 39.0 34.0 39.0 11 37.05278311710243 39.0 37.0 39.0 33.0 39.0 12 36.59289814302781 39.0 35.0 39.0 33.0 39.0 13 36.4450661352464 39.0 35.0 39.0 32.0 39.0 14 37.46085548228752 40.0 35.0 41.0 32.0 41.0 15 37.581354362962266 40.0 35.0 41.0 32.0 41.0 16 37.677167173887455 40.0 35.0 41.0 33.0 41.0 17 37.613350351730645 40.0 35.0 41.0 33.0 41.0 18 37.536074095928356 39.0 36.0 41.0 33.0 41.0 19 37.49636346648972 39.0 35.0 41.0 33.0 41.0 20 37.34915859300805 39.0 35.0 41.0 32.0 41.0 21 37.28338753106136 39.0 35.0 41.0 32.0 41.0 22 37.20628924873299 39.0 35.0 41.0 32.0 41.0 23 37.11670160741913 39.0 35.0 41.0 32.0 41.0 24 37.00874606306851 39.0 35.0 41.0 32.0 41.0 25 36.885845732766214 39.0 35.0 41.0 31.0 41.0 26 36.73286094852274 38.0 35.0 41.0 31.0 41.0 27 36.64330560690147 38.0 35.0 41.0 31.0 41.0 28 36.67006969579976 38.0 35.0 41.0 31.0 41.0 29 36.67063916756105 38.0 35.0 41.0 31.0 41.0 30 36.57168483217275 38.0 35.0 41.0 31.0 41.0 31 36.47142203406989 38.0 35.0 41.0 31.0 41.0 32 36.38615973346901 38.0 35.0 41.0 30.0 41.0 33 36.27231068749137 38.0 35.0 41.0 30.0 41.0 34 36.08975911149399 38.0 35.0 41.0 30.0 41.0 35 36.009280633819685 38.0 35.0 41.0 30.0 41.0 36 35.90511629298379 38.0 35.0 41.0 29.0 41.0 37 35.82537897402736 38.0 35.0 41.0 29.0 41.0 38 35.718453768192695 38.0 35.0 41.0 29.0 41.0 39 35.615165421033 38.0 35.0 40.0 29.0 41.0 40 35.463303972406955 38.0 35.0 40.0 28.0 41.0 41 35.3913194467778 38.0 35.0 40.0 28.0 41.0 42 35.30549417770944 37.0 34.0 40.0 27.0 41.0 43 35.188743578810275 37.0 34.0 40.0 27.0 41.0 44 34.97169398013938 37.0 34.0 40.0 26.0 41.0 45 34.88733195217824 37.0 34.0 40.0 26.0 41.0 46 34.85061825730369 37.0 34.0 40.0 26.0 41.0 47 34.78896117902116 36.0 34.0 40.0 26.0 41.0 48 34.702966390760814 36.0 34.0 40.0 26.0 41.0 49 34.61865096973866 36.0 34.0 40.0 26.0 41.0 50 34.50857188318263 36.0 34.0 40.0 26.0 41.0 51 34.14955516386458 35.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 10.0 12 9.0 13 24.0 14 46.0 15 141.0 16 363.0 17 914.0 18 1939.0 19 3744.0 20 6200.0 21 10116.0 22 15054.0 23 22192.0 24 32571.0 25 45795.0 26 59394.0 27 70698.0 28 79463.0 29 89548.0 30 103326.0 31 124246.0 32 155077.0 33 201144.0 34 345830.0 35 519296.0 36 358069.0 37 462490.0 38 668109.0 39 1236365.0 40 872.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.93906587121267 24.302830645341356 26.8940897415526 12.864013741893373 2 32.5747168845234 25.600194405129624 27.82217480116721 14.002913909179767 3 30.85392366477081 25.158989275418175 29.803294872131154 14.183792187679856 4 26.135111998642113 28.82478760784358 29.29213597867093 15.747964414843377 5 23.806629327643964 32.437258931027586 28.574540862037605 15.181570879290845 6 22.447982862520153 41.08202235962477 25.94031667138878 10.52967810646629 7 87.17836605610132 3.7400876253807946 7.146252791267897 1.9352935272499934 8 86.5844635877328 3.3298598518506313 6.897133283055647 3.1885432773609286 9 81.20626128456962 5.066499430853404 9.908700258202442 3.8185390263745416 10 45.573327130636216 24.945659560806554 15.447945793745435 14.033067514811792 11 35.14624932284453 24.82643250762457 23.368350680146982 16.65896748938391 12 31.23562365612143 21.557898716401546 27.479212763277722 19.727264864199302 13 25.147174958330144 26.535671542041516 29.752070594554965 18.56508290507337 14 21.313028026811782 28.178945499579775 31.113903673645638 19.3941227999628 15 21.06434207152019 22.92541133875289 37.22663133499399 18.783615254732936 16 24.32266569146163 21.474764943864653 34.18577786005649 20.016791504617228 17 23.936977013240924 22.04332624402049 28.561599307355856 25.458097435382733 18 25.252441607466825 21.931512945781822 31.18504970792624 21.63099573882512 19 27.400804717576037 25.36598911738814 25.9178586300985 21.31534753493732 20 28.750303216073885 24.61212729894146 25.686904989261976 20.950664495722677 21 26.62203528383734 26.2099865880404 27.342253395640668 19.82572473248159 22 25.759676846995056 22.535235387803333 27.477044998674412 24.2280427665272 23 24.47785595941251 26.0951384193571 26.173394721536546 23.253610899693847 24 24.085295467399312 23.946471822203417 31.085137437359734 20.88309527303754 25 24.343693008113725 23.82620424201184 28.663809408401864 23.166293341472567 26 21.641205910106702 26.98006328571983 27.48014490205714 23.898585902116324 27 22.762048598247535 25.268287966717008 27.402950804533315 24.56671263050214 28 21.154867921354366 26.691685560541657 29.71153339647309 22.44191312163089 29 23.153872050295607 24.575600465375704 28.737188240223873 23.533339244104816 30 23.677408879640723 26.214733992521644 27.965529074384026 22.142328053453607 31 26.55149622364567 25.809708854039425 24.971434281939896 22.667360640375005 32 27.625233386956605 25.81998405825911 24.74479449266396 21.80998806212033 33 25.898630558067154 25.417213394964328 24.73005369336146 23.954102353607063 34 22.061665532564483 27.87593536332927 27.172669170723818 22.889729933382426 35 21.902768387141947 27.640060896843238 26.708203926818868 23.748966789195947 36 25.990218612556948 27.556732025492042 24.030884575856263 22.422164786094744 37 23.072927720008053 28.75444364646621 25.45163749686487 22.720991136660867 38 23.514089494427438 28.728452148872535 24.38906432126098 23.36839403543905 39 23.600409880931196 26.794871155659155 25.476458401572756 24.128260561836896 40 25.04288380326496 24.409072788549523 26.485357725598718 24.0626856825868 41 20.74747991945454 24.693180017459177 27.2449857978902 27.314354265196084 42 23.16167600286752 25.104946903857687 26.383017558676507 25.350359534598283 43 22.562614254743124 23.770232559954408 28.4399660354642 25.227187149838276 44 23.01210024523921 25.633144427099918 27.087432666521714 24.267322661139158 45 21.815992770071496 26.11202530561687 26.239988450150193 25.831993474161436 46 23.78196016645831 25.8502460521213 26.504867607028498 23.862926174391895 47 22.274214851918916 25.303102266246146 28.452257260764956 23.970425621069978 48 23.013184127540864 24.62454859011842 28.467843488262744 23.89442379407797 49 23.78143990295351 23.695813201122814 28.32242983867279 24.20031705725088 50 22.039749432425033 25.663970039758972 28.022541283451048 24.27373924436495 51 21.512462370316193 26.429884629400046 26.553230435328317 25.50442256495544 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2490.0 1 4784.5 2 7079.0 3 25394.0 4 43709.0 5 30135.5 6 16562.0 7 16649.5 8 16737.0 9 17788.5 10 18840.0 11 19350.0 12 19860.0 13 20161.5 14 20463.0 15 19605.0 16 18747.0 17 18721.0 18 18695.0 19 18275.5 20 17856.0 21 18972.0 22 20088.0 23 20711.5 24 21335.0 25 21359.0 26 26430.5 27 31478.0 28 36764.5 29 42051.0 30 48215.0 31 54379.0 32 62757.0 33 71135.0 34 81427.0 35 91719.0 36 99255.0 37 106791.0 38 120650.0 39 134509.0 40 166914.5 41 199320.0 42 230182.5 43 261045.0 44 303939.0 45 346833.0 46 362974.0 47 379115.0 48 369529.5 49 359944.0 50 337244.0 51 314544.0 52 301752.5 53 288961.0 54 277891.5 55 266822.0 56 261924.5 57 257027.0 58 250177.0 59 243327.0 60 226231.5 61 209136.0 62 196811.0 63 184486.0 64 165888.0 65 147290.0 66 128057.5 67 108825.0 68 93936.5 69 79048.0 70 68438.0 71 57828.0 72 50683.0 73 43538.0 74 37766.0 75 25112.5 76 18231.0 77 14307.5 78 10384.0 79 7933.0 80 5482.0 81 3967.5 82 2453.0 83 1710.5 84 968.0 85 648.5 86 329.0 87 213.5 88 98.0 89 72.0 90 46.0 91 44.0 92 42.0 93 28.0 94 14.0 95 10.0 96 6.0 97 4.5 98 3.0 99 2.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 4613047.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.541219619092622 #Duplication Level Percentage of deduplicated Percentage of total 1 78.35706409500116 15.311925981877348 2 8.463270102529046 3.307652395384412 3 2.8441435991059962 1.6673410409510037 4 1.4489848696423167 1.1325972624969123 5 0.8532642407432335 0.8336911960740921 6 0.6192256750508888 0.7260254945970179 7 0.45391962664661073 0.6209100179602564 8 0.3571319846218532 0.5583035635598433 9 0.30916534385312305 0.5437321094561549 >10 3.4317235889954287 16.00988741717654 >50 1.5971301821939325 22.78255341813059 >100 1.2575087389765294 34.08652013002103 >500 0.004526031902952905 0.5822501704905798 >1k 0.0027156191417702998 1.1493984966619515 >5k 1.1315079757376247E-4 0.11059945136492856 >10k+ 1.1315079757376247E-4 0.5766118537974023 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 26078 0.5653096532508773 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 5002 0.1084315854575078 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.503293809926497E-5 0.0 0.0 0.08100936322565107 0.0 2 6.503293809926497E-5 0.0 0.0 0.2754361704964203 0.0 3 6.503293809926497E-5 0.0 0.0 0.4094040229809061 0.0 4 6.503293809926497E-5 0.0 0.0 0.7456459906001391 0.0 5 6.503293809926497E-5 0.0 0.0 1.2495645502853103 0.0 6 6.503293809926497E-5 0.0 0.0 2.132495073212998 0.0 7 6.503293809926497E-5 0.0 0.0 2.540663470370018 0.0 8 6.503293809926497E-5 0.0 0.0 3.6467653592083495 0.0 9 6.503293809926497E-5 0.0 0.0 4.15341530229369 0.0 10 6.503293809926497E-5 0.0 0.0 4.93029878082751 0.0 11 1.0838823016544163E-4 0.0 0.0 5.613816637896817 0.0 12 1.0838823016544163E-4 0.0 0.0 6.1491894619759995 0.0 13 1.0838823016544163E-4 0.0 0.0 6.409646379063556 0.0 14 1.0838823016544163E-4 0.0 0.0 6.539842321138284 0.0 15 1.0838823016544163E-4 0.0 0.0 6.683760213151958 0.0 16 1.3006587619852995E-4 0.0 0.0 6.947468777144477 0.0 17 1.3006587619852995E-4 0.0 0.0 7.236800318748108 0.0 18 1.3006587619852995E-4 0.0 0.0 7.616549321955748 0.0 19 1.3006587619852995E-4 0.0 0.0 7.822682058084386 0.0 20 1.3006587619852995E-4 0.0 0.0 8.040195558380393 0.0 21 1.3006587619852995E-4 0.0 0.0 8.311512976130528 0.0 22 1.3006587619852995E-4 0.0 0.0 8.58261361742033 0.0 23 1.3006587619852995E-4 0.0 0.0 8.883347600837364 0.0 24 1.3006587619852995E-4 0.0 0.0 9.129020363330355 0.0 25 1.3006587619852995E-4 0.0 0.0 9.339271852205277 0.0 26 1.3006587619852995E-4 0.0 0.0 9.542543139057546 0.0 27 1.3006587619852995E-4 0.0 0.0 9.748025545805191 0.0 28 1.3006587619852995E-4 0.0 0.0 9.963241215621693 0.0 29 1.3006587619852995E-4 0.0 0.0 10.19521370582177 0.0 30 1.3006587619852995E-4 0.0 0.0 10.557252072220379 0.0 31 1.5174352223161827E-4 0.0 0.0 10.82013688566364 0.0 32 1.734211682647066E-4 0.0 0.0 11.069191360937792 0.0 33 1.734211682647066E-4 0.0 0.0 11.312046029446481 0.0 34 1.734211682647066E-4 0.0 0.0 11.564092019873199 0.0 35 1.734211682647066E-4 0.0 0.0 11.867860873734866 0.0 36 1.734211682647066E-4 0.0 0.0 12.129965291920936 0.0 37 1.734211682647066E-4 0.0 0.0 12.388731352617912 0.0 38 2.1677646033088326E-4 0.0 0.0 12.704314523567612 0.0 39 2.1677646033088326E-4 0.0 0.0 13.167457431064543 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATTACG 75 0.0 45.000004 1 CAATACG 70 0.0 41.785717 1 CGTTTTT 14745 0.0 40.910477 1 AGGGTAC 1930 0.0 38.937824 6 TAGGGTA 1565 0.0 38.530354 5 GGCGATA 2080 0.0 38.293266 8 GGGCGAT 10560 0.0 38.18182 7 ACGGGTA 365 0.0 37.602737 5 ACGGGAT 1085 0.0 37.53456 5 AACACGT 2225 0.0 37.415733 41 AAGGGAT 4025 0.0 37.341614 5 CACGACC 2405 0.0 37.32848 27 CGTATGG 585 0.0 37.307693 2 GCGATAA 525 0.0 37.285717 9 AGGGCGA 5305 0.0 37.0688 6 CGCATGA 85 0.0 37.058823 11 CGTAAGG 735 0.0 37.040817 2 TAAGGGA 3720 0.0 36.83468 4 ACAACGA 1170 0.0 36.73077 13 TTGATCC 2665 0.0 36.726078 17 >>END_MODULE