##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546998_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2105447 Sequences flagged as poor quality 0 Sequence length 51 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.59954536970059 31.0 31.0 33.0 30.0 34.0 2 31.99411193917491 31.0 31.0 34.0 30.0 34.0 3 32.111894528810275 33.0 31.0 34.0 30.0 34.0 4 35.795387392795924 37.0 35.0 37.0 35.0 37.0 5 35.74002100266594 37.0 35.0 37.0 33.0 37.0 6 35.790313410881396 37.0 35.0 37.0 35.0 37.0 7 36.08883101783137 37.0 35.0 37.0 35.0 37.0 8 36.01547699847111 37.0 35.0 37.0 35.0 37.0 9 37.795524180850904 39.0 38.0 39.0 35.0 39.0 10 37.34688168355699 39.0 37.0 39.0 34.0 39.0 11 37.08998421712824 39.0 37.0 39.0 33.0 39.0 12 36.60192111223888 39.0 35.0 39.0 33.0 39.0 13 36.46287415451446 39.0 35.0 39.0 32.0 39.0 14 37.49023983980599 40.0 35.0 41.0 32.0 41.0 15 37.62345573172823 40.0 35.0 41.0 33.0 41.0 16 37.7187314617751 40.0 35.0 41.0 33.0 41.0 17 37.660909061116236 40.0 35.0 41.0 33.0 41.0 18 37.60821716243629 39.0 36.0 41.0 33.0 41.0 19 37.54225634746446 39.0 35.0 41.0 33.0 41.0 20 37.4050987747495 39.0 35.0 41.0 32.0 41.0 21 37.3448056398475 39.0 35.0 41.0 32.0 41.0 22 37.275571410726556 39.0 35.0 41.0 32.0 41.0 23 37.183144481908116 39.0 35.0 41.0 32.0 41.0 24 37.06920953127768 39.0 35.0 41.0 32.0 41.0 25 36.92095787735336 39.0 35.0 41.0 32.0 41.0 26 36.7718299249518 38.0 35.0 41.0 31.0 41.0 27 36.674530396633116 38.0 35.0 41.0 31.0 41.0 28 36.70999222492896 38.0 35.0 41.0 31.0 41.0 29 36.69610301280441 38.0 35.0 41.0 31.0 41.0 30 36.5977395773914 38.0 35.0 41.0 31.0 41.0 31 36.46388011666881 38.0 35.0 41.0 31.0 41.0 32 36.39107609927963 38.0 35.0 41.0 30.0 41.0 33 36.27762465642688 38.0 35.0 41.0 30.0 41.0 34 36.08254541672149 38.0 35.0 41.0 30.0 41.0 35 35.99621410560323 38.0 35.0 41.0 30.0 41.0 36 35.83949679094273 38.0 35.0 41.0 29.0 41.0 37 35.75624416097864 38.0 35.0 41.0 29.0 41.0 38 35.63639455184576 38.0 35.0 40.0 29.0 41.0 39 35.53478050029281 38.0 35.0 40.0 28.0 41.0 40 35.36352945479036 38.0 34.0 40.0 27.0 41.0 41 35.28647218381655 37.0 34.0 40.0 27.0 41.0 42 35.18891475301919 37.0 34.0 40.0 27.0 41.0 43 35.069644593285894 37.0 34.0 40.0 27.0 41.0 44 34.841627454882506 37.0 34.0 40.0 26.0 41.0 45 34.7516969080675 36.0 34.0 40.0 26.0 41.0 46 34.70492299259967 36.0 34.0 40.0 26.0 41.0 47 34.65030798685505 36.0 34.0 40.0 26.0 41.0 48 34.5655497383691 36.0 34.0 40.0 26.0 41.0 49 34.46110635888721 36.0 34.0 40.0 26.0 41.0 50 34.34642524841518 35.0 34.0 40.0 26.0 41.0 51 33.96888119244987 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 5.0 11 3.0 12 5.0 13 6.0 14 14.0 15 63.0 16 159.0 17 369.0 18 778.0 19 1609.0 20 2788.0 21 4547.0 22 6667.0 23 9840.0 24 14410.0 25 20417.0 26 26780.0 27 32092.0 28 36140.0 29 40565.0 30 47374.0 31 57076.0 32 70146.0 33 92081.0 34 159179.0 35 244568.0 36 167956.0 37 218629.0 38 309687.0 39 541096.0 40 398.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.45206647329522 24.35506569388828 27.94285489019671 13.250012942619785 2 31.401170392795446 25.803119242612137 28.50159609812073 14.29411426647168 3 29.96636818689808 25.4453804821494 30.288817529009282 14.299433801943245 4 25.68361967791163 29.07016894749666 29.94243027727604 15.303781097315678 5 23.39460456615626 32.92398241323576 28.39363802555942 15.287774995048558 6 22.210532965208813 42.09063443534794 25.039813398294996 10.65901920114826 7 88.28809274230129 3.6502462422468955 6.343213578874225 1.7184474365776008 8 88.24487151659481 3.1207624794164848 5.84317724454712 2.7911887594415816 9 82.76755482327506 4.818311740927224 8.797561752919925 3.616571682877793 10 47.17872261804738 23.348628581009162 15.084255267408775 14.388393533534686 11 36.70688457130481 23.891981132747585 21.631178557332483 17.769955738615124 12 31.558524151878437 20.32475764053904 27.627624917654064 20.489093289928455 13 23.700192880656694 27.943472336278237 29.131153622009958 19.22518116105511 14 20.634573085905274 28.54980438833179 31.122797201734357 19.69282532402858 15 20.372443476373427 21.470310105170064 38.080654606836454 20.07659181162005 16 23.43350366929208 19.452923773431486 34.65297392905165 22.46059862822479 17 22.95645532753852 21.083693866433116 27.672033539671148 28.28781726635722 18 25.338514814193854 21.23192842185056 30.333796101255455 23.09576066270013 19 28.028394920413575 24.56960445929059 25.1300555179019 22.271945102393932 20 29.191520850441737 23.869373106993432 24.58195338092101 22.357152661643823 21 26.388315640336707 25.119748917925744 26.885834694485304 21.606100747252245 22 26.089756711995125 22.324570506880487 25.446140415788193 26.139532365336198 23 25.01834527299904 25.3499613146282 24.718598948346834 24.913094464025928 24 23.882244483000523 23.51457908938102 31.094917136361065 21.508259291257392 25 24.451767249424943 23.556375439514746 28.30477328567283 23.687084025387485 26 22.637283199244624 26.268483604669225 25.831996720886348 25.2622364751998 27 23.065458308853177 24.897040865906384 26.895713831789642 25.1417869934508 28 21.841300208459298 25.72247128519502 28.891632038232263 23.544596468113422 29 22.63277109326428 23.66799069271276 28.50444584926621 25.194792364756747 30 24.641180708894595 25.094956082960056 28.11336500040134 22.15049820774401 31 27.626675000605573 24.776876359271927 24.56195762705022 23.034491013072284 32 28.77070759795901 23.838833273884358 24.086666631836376 23.30379249632026 33 27.792198046305604 23.52441073083293 23.93482239163465 24.748568831226812 34 23.02351947116218 25.331770403149545 27.072778369628875 24.5719317560594 35 24.230531568830752 25.536240047837822 26.14523186762716 24.087996515704265 36 27.85674490975076 25.326593355235254 23.415692724632823 23.400969010381168 37 24.1363472934726 27.241531133293783 24.75056365702865 23.871557916204967 38 24.701547937326374 26.096358635482158 24.775166508584636 24.426926918606835 39 23.608383397919777 26.210871135678076 23.50394001843789 26.67680544796426 40 26.298975941925875 23.462856106090534 25.45126996785006 24.786897984133535 41 22.139669153391182 23.365774583734474 25.72722087043749 28.767335392436856 42 23.979420997061432 24.423792192346802 25.306027651135366 26.2907591594564 43 23.424954415855638 22.907439607836245 27.573717125152047 26.093888851156073 44 23.691881106482377 24.77369413715947 26.33208055106588 25.20234420529227 45 22.14755346489368 25.664906312056303 25.154563377753036 27.032976845296986 46 24.058929054020357 24.955508260241174 26.19030543157819 24.79525725416028 47 23.424526953183815 24.217565201118813 27.63484428722262 24.723063558474756 48 24.02135983475243 23.3579377680844 27.68632979125098 24.934372605912188 49 23.821259808487223 22.80565599609014 28.130843474093624 25.24224072132901 50 22.97611861044234 25.299473223500758 27.109540159405583 24.61486800665132 51 22.199703910855984 25.997519766586386 25.808866240755524 25.993910081802106 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 998.0 1 1804.0 2 2610.0 3 9660.0 4 16710.0 5 11717.0 6 6724.0 7 6837.5 8 6951.0 9 7424.5 10 7898.0 11 8015.5 12 8133.0 13 8208.5 14 8284.0 15 8268.0 16 8252.0 17 7943.0 18 7634.0 19 7475.0 20 7316.0 21 7475.0 22 7634.0 23 7893.0 24 8152.0 25 8496.5 26 10380.0 27 11919.0 28 13517.5 29 15116.0 30 17626.5 31 20137.0 32 24240.0 33 28343.0 34 34313.0 35 40283.0 36 42162.0 37 44041.0 38 49709.5 39 55378.0 40 68549.5 41 81721.0 42 91846.0 43 101971.0 44 111195.5 45 120420.0 46 125021.5 47 129623.0 48 143750.5 49 157878.0 50 164137.0 51 170396.0 52 166872.5 53 163349.0 54 151420.0 55 139491.0 56 132601.5 57 125712.0 58 123527.5 59 121343.0 60 113928.0 61 106513.0 62 100155.0 63 93797.0 64 84567.5 65 75338.0 66 67671.0 67 60004.0 68 51817.0 69 43630.0 70 38198.0 71 32766.0 72 28234.0 73 23702.0 74 19750.0 75 12743.5 76 9689.0 77 7583.0 78 5477.0 79 4267.5 80 3058.0 81 2126.5 82 1195.0 83 918.5 84 642.0 85 520.0 86 398.0 87 246.5 88 95.0 89 76.5 90 58.0 91 38.5 92 19.0 93 13.5 94 8.0 95 4.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2105447.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.739125758548997 #Duplication Level Percentage of deduplicated Percentage of total 1 78.11966143212842 16.982531440883093 2 7.162012501271955 3.113917808989022 3 2.495113564905477 1.62724762708025 4 1.3408384604841885 1.1659462365746003 5 0.8752762771037046 0.9513870530716007 6 0.6825038369657724 0.8902222045494688 7 0.5353950378721493 0.814731404116403 8 0.42526309463958195 0.7395878315871677 9 0.37400204312015506 0.7317429704408984 >10 5.420116934343917 29.89971831894408 >50 2.361093891346853 35.755460699563955 >100 0.20407972702141342 5.8449035463423265 >500 0.0019899423413353326 0.26335487301667193 >1k 0.0024321517505209622 0.7559375958994705 >5k 2.2110470459281472E-4 0.46331038894099297 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9639 0.4578125215215581 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.7495852424687015E-5 0.0 0.0 0.09009963204963127 0.0 2 4.7495852424687015E-5 0.0 0.0 0.2699189293294963 0.0 3 4.7495852424687015E-5 0.0 0.0 0.39825272258100064 0.0 4 4.7495852424687015E-5 0.0 0.0 0.668314139467771 0.0 5 4.7495852424687015E-5 0.0 0.0 1.0551678574668466 0.0 6 4.7495852424687015E-5 0.0 0.0 1.8017076658780773 0.0 7 4.7495852424687015E-5 0.0 0.0 2.134083641146037 0.0 8 4.7495852424687015E-5 0.0 0.0 3.1175327614516064 0.0 9 4.7495852424687015E-5 0.0 0.0 3.5705007060258462 0.0 10 4.7495852424687015E-5 0.0 0.0 4.245654248242772 0.0 11 4.7495852424687015E-5 0.0 0.0 4.855311009966055 0.0 12 4.7495852424687015E-5 0.0 0.0 5.333071789505982 0.0 13 4.7495852424687015E-5 0.0 0.0 5.573923257151569 0.0 14 4.7495852424687015E-5 0.0 0.0 5.697364977603331 0.0 15 4.7495852424687015E-5 0.0 0.0 5.824701357953916 0.0 16 4.7495852424687015E-5 0.0 0.0 6.055008746361224 0.0 17 4.7495852424687015E-5 0.0 0.0 6.305216896934475 0.0 18 4.7495852424687015E-5 0.0 0.0 6.655546304418967 0.0 19 4.7495852424687015E-5 0.0 0.0 6.82187677961022 0.0 20 4.7495852424687015E-5 0.0 0.0 7.000508680579468 0.0 21 4.7495852424687015E-5 0.0 0.0 7.2195120561097 0.0 22 4.7495852424687015E-5 0.0 0.0 7.452241732990666 0.0 23 4.7495852424687015E-5 0.0 0.0 7.709574261427621 0.0 24 4.7495852424687015E-5 0.0 0.0 7.921453259094149 0.0 25 4.7495852424687015E-5 0.0 0.0 8.102697431946755 0.0 26 4.7495852424687015E-5 0.0 0.0 8.265750693320706 0.0 27 4.7495852424687015E-5 0.0 0.0 8.45093702192456 0.0 28 4.7495852424687015E-5 0.0 0.0 8.616032604952773 0.0 29 4.7495852424687015E-5 0.0 0.0 8.813045400810374 0.0 30 4.7495852424687015E-5 0.0 0.0 9.089281278512354 0.0 31 4.7495852424687015E-5 0.0 0.0 9.280214605259596 0.0 32 4.7495852424687015E-5 0.0 0.0 9.478604780837513 0.0 33 4.7495852424687015E-5 0.0 0.0 9.679797211708488 0.0 34 4.7495852424687015E-5 0.0 0.0 9.880324700645517 0.0 35 4.7495852424687015E-5 0.0 0.0 10.129012983941177 0.0 36 4.7495852424687015E-5 0.0 0.0 10.326785713437575 0.0 37 4.7495852424687015E-5 0.0 0.0 10.52992547425796 0.0012348921630418624 38 9.499170484937403E-5 0.0 0.0 10.777426361243004 0.0012348921630418624 39 9.499170484937403E-5 0.0 0.0 11.20522150403216 0.0012348921630418624 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGATAA 275 0.0 41.727272 9 CGTAAGG 390 0.0 41.53846 2 CGTTTTT 5980 0.0 41.049335 1 GGCGATA 1155 0.0 39.935066 8 CATATGC 1230 0.0 39.512196 33 AGGGTAC 1025 0.0 39.51219 6 GGGCGAT 4585 0.0 39.40567 7 GCGTAAG 275 0.0 39.272728 1 TAGCATA 1280 0.0 39.199223 30 ATACTAT 1600 0.0 39.09375 45 AGGGCGA 2580 0.0 38.982555 6 CACGACC 1475 0.0 38.898308 27 ACGACCA 1500 0.0 38.399998 28 TTACGGG 510 0.0 38.382355 3 GCGATAT 290 0.0 38.017242 9 GCCCTAC 1720 0.0 37.805233 26 AGACACG 1525 0.0 37.770493 24 GTTGATC 1330 0.0 37.725563 16 TATGGGA 1585 0.0 37.618298 4 TAGGGAC 1390 0.0 37.553955 5 >>END_MODULE