##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546997_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2384685 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.711932183915277 31.0 31.0 33.0 30.0 34.0 2 32.11998188439983 33.0 31.0 34.0 30.0 34.0 3 32.225834020006836 33.0 31.0 34.0 30.0 34.0 4 35.905244927527114 37.0 35.0 37.0 35.0 37.0 5 35.87295009613429 37.0 35.0 37.0 35.0 37.0 6 35.931474387602556 37.0 35.0 37.0 35.0 37.0 7 36.20095400440729 37.0 35.0 37.0 35.0 37.0 8 36.14100856087911 37.0 35.0 37.0 35.0 37.0 9 37.92858134302853 39.0 38.0 39.0 35.0 39.0 10 37.40022854171515 39.0 37.0 39.0 34.0 39.0 11 37.2397104858713 39.0 37.0 39.0 34.0 39.0 12 36.92285186513104 39.0 35.0 39.0 33.0 39.0 13 36.849205240943775 39.0 35.0 39.0 33.0 39.0 14 37.98587570266094 40.0 37.0 41.0 33.0 41.0 15 38.062011544501686 40.0 36.0 41.0 33.0 41.0 16 38.11670681872029 40.0 36.0 41.0 33.0 41.0 17 38.06769321734317 40.0 36.0 41.0 33.0 41.0 18 37.97211707206612 40.0 36.0 41.0 33.0 41.0 19 37.914585783866634 40.0 36.0 41.0 33.0 41.0 20 37.772700796960606 40.0 35.0 41.0 33.0 41.0 21 37.72420592237549 40.0 35.0 41.0 33.0 41.0 22 37.63289952341714 40.0 35.0 41.0 33.0 41.0 23 37.521449583487964 39.0 35.0 41.0 33.0 41.0 24 37.445962464644175 39.0 35.0 41.0 33.0 41.0 25 37.31301324912934 39.0 35.0 41.0 32.0 41.0 26 37.19409104347115 39.0 35.0 41.0 32.0 41.0 27 37.11208608264823 39.0 35.0 41.0 32.0 41.0 28 37.13447142914054 39.0 35.0 41.0 32.0 41.0 29 37.12722267301552 39.0 35.0 41.0 32.0 41.0 30 37.037595741156586 39.0 35.0 41.0 32.0 41.0 31 36.92919274453439 39.0 35.0 41.0 32.0 41.0 32 36.82796176434204 39.0 35.0 41.0 31.0 41.0 33 36.67572530543866 39.0 35.0 41.0 31.0 41.0 34 36.48424508897401 39.0 35.0 41.0 30.0 41.0 35 36.34378586689647 39.0 35.0 41.0 30.0 41.0 36 36.246711410521726 39.0 35.0 41.0 30.0 41.0 37 36.14008894256474 39.0 35.0 41.0 30.0 41.0 38 36.03569737722173 39.0 35.0 41.0 30.0 41.0 39 35.90827216173205 38.0 35.0 41.0 29.0 41.0 40 35.779721430713074 38.0 35.0 41.0 29.0 41.0 41 35.703770099614836 38.0 35.0 41.0 29.0 41.0 42 35.61865110066948 38.0 35.0 41.0 28.0 41.0 43 35.52925816197946 38.0 35.0 40.0 28.0 41.0 44 35.384521226073886 38.0 35.0 40.0 27.0 41.0 45 35.26925526851555 38.0 34.0 40.0 27.0 41.0 46 35.21087481155792 37.0 34.0 40.0 27.0 41.0 47 35.14832692787517 37.0 34.0 40.0 27.0 41.0 48 35.05983851116604 37.0 34.0 40.0 27.0 41.0 49 34.95330913726551 37.0 34.0 40.0 27.0 41.0 50 34.85192803242357 37.0 34.0 40.0 26.0 41.0 51 34.480782577153796 36.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 5.0 12 9.0 13 10.0 14 19.0 15 48.0 16 132.0 17 308.0 18 691.0 19 1350.0 20 2448.0 21 4012.0 22 6138.0 23 9607.0 24 14171.0 25 21285.0 26 28927.0 27 34095.0 28 36756.0 29 40023.0 30 45877.0 31 55366.0 32 68943.0 33 91594.0 34 159386.0 35 242522.0 36 185031.0 37 245260.0 38 371025.0 39 719184.0 40 462.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.07351495061193 23.976625843664888 27.388606880992665 14.56125232473052 2 32.90472326533693 26.27055564990764 27.87693133474652 12.947789750008912 3 30.118443316412858 25.734593877178746 30.550911336298086 13.596051470110307 4 25.796027567582303 28.510264458408553 30.39558683851326 15.298121135495881 5 23.48012420927712 32.40356692812678 29.17592889626932 14.94037996632679 6 22.591788852615753 41.372424450189435 25.82949110679188 10.206295590402926 7 89.0147755363916 3.032643724433206 6.5803659602840625 1.3722147788911323 8 88.72698071233727 2.6882795840960125 6.557721460067052 2.0270182434996653 9 83.26252733589553 4.171871756647104 9.372432837041371 3.193168070416009 10 40.375730966563715 23.158530371935914 22.721114109410674 13.74462455208969 11 33.80576470267562 26.123953478132332 22.900802412058617 17.169479407133437 12 28.596984507387766 23.32379328926043 28.00399214151974 20.075230061832066 13 23.847929600764882 26.541534835837854 30.55187582427029 19.05865973912697 14 22.090003501510683 28.017369170351643 30.954444717017132 18.938182611120546 15 21.892618941285747 23.341657283876067 35.85173723154212 18.913986543296073 16 24.438363976793582 21.647764799124413 33.80647758508986 20.107393638992153 17 24.375714192859853 21.934133858350265 29.00227912701258 24.687872821777297 18 24.930462513916932 22.804479417617003 30.900559193352585 21.364498875113487 19 27.516128964622162 24.470527553953666 27.192102940220614 20.821240541203558 20 28.72148732432166 24.48021436793539 26.157668622899884 20.64062968484307 21 27.293374177302244 24.92660456202811 28.088154200659627 19.691867060010022 22 26.248288558027582 22.556815680058374 27.93861663070804 23.25627913120601 23 24.09525786424622 26.236043754206527 27.336692267532193 22.33200611401506 24 23.56013477671055 24.788682782002656 31.16738688757635 20.48379555371045 25 23.668325166636265 24.602997880223175 29.765189113027507 21.963487840113054 26 21.762329196518618 27.170213256677506 27.96620937356506 23.101248173238815 27 22.476763178365278 25.973535288727863 28.460446557931128 23.08925497497573 28 21.800489372810244 26.39283595107949 30.63947649270239 21.16719818340787 29 22.53811300024951 24.325938226642094 30.120498095136256 23.015450677972144 30 23.893889549353478 24.849739064069258 30.072860776161214 21.18351061041605 31 26.052916842266377 25.17716176350336 26.72285857461258 22.047062819617686 32 27.315683203441964 24.886389607013086 26.61206826058788 21.185858928957074 33 26.24115973388519 24.764151240100894 26.358701463715335 22.635987562298585 34 23.8760674889975 25.949171483864745 28.142668738219097 22.032092288918662 35 23.958216703673653 25.840897225419713 28.682194923019182 21.518691147887456 36 27.864392991107838 25.925688298454514 25.45472462820037 20.755194082237278 37 24.778995968020933 27.111211753334295 26.816455842176218 21.29333643646855 38 25.674418214565026 27.06042936488467 26.049478232974167 21.215674187576138 39 24.461302016828217 26.998115055028233 25.975673935970576 22.56490899217297 40 25.68670495264574 25.379201026550675 27.137294862843518 21.796799157960066 41 22.697924463818072 25.068719768019676 27.78933066631442 24.44402510184783 42 24.317132032113257 25.846055139358025 26.343143853381058 23.49366897514766 43 23.484191832464248 24.861941933630646 27.810465533183624 23.843400700721478 44 23.51220391791788 25.97303207761193 27.999756781293968 22.515007223176227 45 22.622149256610413 26.438166885773175 27.209925000576597 23.72975885703982 46 23.68300215751766 26.274161996238497 27.52577384434422 22.51706200189962 47 23.458569999811296 25.301622646177584 28.61564525293697 22.62416210107415 48 23.81421445599733 25.18575828673389 28.69553001759142 22.304497239677357 49 23.588314599202832 25.128601890815766 28.513954673258734 22.76912883672267 50 23.175891155435625 26.138043389378474 27.934632876040233 22.75143257914567 51 22.863690592258518 26.909507964364266 27.1099117912848 23.116889652092414 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1244.0 1 2191.5 2 3139.0 3 14025.5 4 24912.0 5 17477.0 6 10042.0 7 10077.5 8 10113.0 9 10670.0 10 11227.0 11 11381.0 12 11535.0 13 11411.5 14 11288.0 15 10928.0 16 10568.0 17 10495.0 18 10422.0 19 10579.0 20 10736.0 21 10679.5 22 10623.0 23 11009.0 24 11395.0 25 13411.0 26 16340.0 27 17253.0 28 21855.0 29 26457.0 30 30901.0 31 35345.0 32 41437.5 33 47530.0 34 54168.5 35 60807.0 36 63899.5 37 66992.0 38 75798.5 39 84605.0 40 97484.5 41 110364.0 42 119590.5 43 128817.0 44 134709.0 45 140601.0 46 147993.0 47 155385.0 48 161325.5 49 167266.0 50 174813.0 51 182360.0 52 177239.0 53 172118.0 54 162261.0 55 152404.0 56 140386.0 57 128368.0 58 121065.5 59 113763.0 60 108412.0 61 103061.0 62 95611.5 63 88162.0 64 79484.0 65 70806.0 66 62671.0 67 54536.0 68 47272.0 69 40008.0 70 34425.5 71 28843.0 72 25020.5 73 21198.0 74 18242.0 75 12576.5 76 9867.0 77 7396.0 78 4925.0 79 3818.5 80 2712.0 81 1891.0 82 1070.0 83 849.0 84 628.0 85 446.5 86 265.0 87 172.5 88 80.0 89 79.5 90 79.0 91 53.5 92 28.0 93 24.5 94 21.0 95 12.0 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2384685.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.374574127783085 #Duplication Level Percentage of deduplicated Percentage of total 1 76.865352549 16.429641759167808 2 6.525883616467048 2.7897596621892014 3 2.4069772216622445 1.5434433914491505 4 1.3539117382896302 1.1575714725018937 5 0.9422221441505044 1.0069798532491836 6 0.7305012691992655 0.9368492117363597 7 0.603908920953051 0.9035807198138339 8 0.5206628899474119 0.8903158029413377 9 0.44033819098215354 0.8470837173997751 >10 7.461448404996415 40.96974923170263 >50 2.0547318303288384 28.70379080744731 >100 0.09069486402406982 2.67673437813101 >500 0.0025742752936726626 0.39155952028454893 >1k 5.94063529309076E-4 0.148310945743926 >5k 0.0 0.0 >10k+ 1.9802117643635863E-4 0.6046295262420043 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14285 0.5990308992592313 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.045037394876052815 0.0 2 0.0 0.0 0.0 0.13628634389867006 0.0 3 0.0 0.0 0.0 0.21667431966905482 0.0 4 0.0 0.0 0.0 0.362731346068768 0.0 5 0.0 0.0 0.0 0.5770992814564607 0.0 6 0.0 0.0 0.0 1.0465533183628026 0.0 7 0.0 0.0 0.0 1.2537504953484422 0.0 8 0.0 0.0 0.0 1.8267821536177735 0.0 9 0.0 0.0 0.0 2.141708443672854 0.0 10 0.0 0.0 0.0 2.6226105334666845 0.0 11 0.0 0.0 0.0 3.02647938826302 0.0 12 0.0 0.0 0.0 3.361701859994087 0.0 13 0.0 0.0 0.0 3.543990086741016 0.0 14 0.0 0.0 0.0 3.647567708104005 0.0 15 0.0 0.0 0.0 3.743513294208669 0.0 16 4.193425966112925E-5 0.0 0.0 3.9078117235609735 0.0 17 4.193425966112925E-5 0.0 0.0 4.072864969587179 0.0 18 4.193425966112925E-5 0.0 0.0 4.286352285521987 0.0 19 4.193425966112925E-5 0.0 0.0 4.403642409794165 0.0 20 4.193425966112925E-5 0.0 0.0 4.5333870091857 0.0 21 4.193425966112925E-5 0.0 0.0 4.688879244009167 0.0 22 4.193425966112925E-5 0.0 0.0 4.8490681159146805 0.0 23 4.193425966112925E-5 0.0 0.0 5.025108137972101 0.0 24 4.193425966112925E-5 0.0 0.0 5.168397503234179 0.0 25 4.193425966112925E-5 0.0 0.0 5.296338929460285 0.0 26 4.193425966112925E-5 0.0 0.0 5.416396714870098 0.0 27 4.193425966112925E-5 0.0 0.0 5.552179847652835 0.0 28 4.193425966112925E-5 0.0 0.0 5.682092184083013 0.0 29 4.193425966112925E-5 0.0 0.0 5.827352459549164 0.0 30 4.193425966112925E-5 0.0 0.0 6.037778574528711 0.0 31 4.193425966112925E-5 0.0 0.0 6.190964425070817 0.0 32 4.193425966112925E-5 0.0 0.0 6.350859757158703 0.0 33 4.193425966112925E-5 0.0 0.0 6.505345569750302 0.0 34 4.193425966112925E-5 0.0 0.0 6.658866894369696 0.0 35 4.193425966112925E-5 0.0 0.0 6.829874805267782 0.0 36 4.193425966112925E-5 0.0 0.0 6.9853251058315875 0.0 37 4.193425966112925E-5 0.0 0.0 7.151929919465254 0.0 38 4.193425966112925E-5 0.0 0.0 7.339585731448808 0.0 39 4.193425966112925E-5 0.0 0.0 7.600165220983065 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 9190 0.0 41.058216 1 GCGTAAG 130 0.0 39.80769 1 CGTAAGG 325 0.0 38.76923 2 ACTATCG 35 6.2511153E-6 38.571426 38 TACGGGT 560 0.0 38.571426 4 TCACGAC 65 9.094947E-12 38.07692 25 TAGGGAC 1585 0.0 37.902206 5 ACGTAGG 380 0.0 37.894737 2 TCGTTAG 155 0.0 37.741936 1 ATAGGGT 1690 0.0 37.544376 4 ACGTACG 30 1.1402897E-4 37.500004 1 TAGTACG 90 0.0 37.5 1 AACGGGA 470 0.0 37.340427 4 AGGGCGA 3460 0.0 37.26156 6 AGGGTAC 1775 0.0 37.014084 6 TAGGGTA 1620 0.0 36.805553 5 GGCGATA 1150 0.0 36.782608 8 TAGGGTC 1425 0.0 36.63158 5 GGGCGAT 6525 0.0 36.58621 7 ATAGGGA 1900 0.0 36.23684 4 >>END_MODULE