##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546993_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1099446 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.611588927514404 31.0 31.0 33.0 30.0 34.0 2 31.992173330932125 31.0 31.0 34.0 30.0 34.0 3 32.123497652454056 33.0 31.0 34.0 30.0 34.0 4 35.80218491858627 37.0 35.0 37.0 35.0 37.0 5 35.747131737256765 37.0 35.0 37.0 33.0 37.0 6 35.793563303700225 37.0 35.0 37.0 35.0 37.0 7 36.09160249798535 37.0 35.0 37.0 35.0 37.0 8 36.00961484238425 37.0 35.0 37.0 35.0 37.0 9 37.78136443263244 39.0 38.0 39.0 35.0 39.0 10 37.3375581883967 39.0 37.0 39.0 34.0 39.0 11 37.0800585021911 39.0 37.0 39.0 33.0 39.0 12 36.592508408780425 39.0 35.0 39.0 33.0 39.0 13 36.42442011704076 39.0 35.0 39.0 32.0 39.0 14 37.52941026662519 40.0 35.0 41.0 33.0 41.0 15 37.63745922946648 40.0 35.0 41.0 33.0 41.0 16 37.72787749466549 40.0 35.0 41.0 33.0 41.0 17 37.67904017114074 40.0 35.0 41.0 33.0 41.0 18 37.60735679605911 39.0 36.0 41.0 33.0 41.0 19 37.56274523714671 39.0 35.0 41.0 33.0 41.0 20 37.43043314542051 39.0 35.0 41.0 33.0 41.0 21 37.36285274583745 39.0 35.0 41.0 33.0 41.0 22 37.253060177580345 39.0 35.0 41.0 32.0 41.0 23 37.1696472587103 39.0 35.0 41.0 32.0 41.0 24 37.0541809238471 39.0 35.0 41.0 32.0 41.0 25 36.92759353347049 39.0 35.0 41.0 32.0 41.0 26 36.78063497434162 38.0 35.0 41.0 31.0 41.0 27 36.67781500864981 38.0 35.0 41.0 31.0 41.0 28 36.69281983835495 38.0 35.0 41.0 31.0 41.0 29 36.67920298041013 38.0 35.0 41.0 31.0 41.0 30 36.613458960239974 38.0 35.0 41.0 31.0 41.0 31 36.52126889360642 38.0 35.0 41.0 31.0 41.0 32 36.418809109315056 38.0 35.0 41.0 31.0 41.0 33 36.2986404061682 38.0 35.0 41.0 30.0 41.0 34 36.146883066562616 38.0 35.0 41.0 30.0 41.0 35 36.04327543144456 38.0 35.0 41.0 30.0 41.0 36 35.933001711771205 38.0 35.0 41.0 30.0 41.0 37 35.83274121694017 38.0 35.0 41.0 29.0 41.0 38 35.74013275777073 38.0 35.0 41.0 29.0 41.0 39 35.633158881836856 38.0 35.0 40.0 29.0 41.0 40 35.48420750086862 38.0 35.0 40.0 28.0 41.0 41 35.40592443830802 37.0 35.0 40.0 28.0 41.0 42 35.30791871542577 37.0 35.0 40.0 28.0 41.0 43 35.1840472383364 37.0 34.0 40.0 27.0 41.0 44 35.04187017825341 37.0 34.0 40.0 27.0 41.0 45 34.92191067137449 37.0 34.0 40.0 26.0 41.0 46 34.86669649987357 36.0 34.0 40.0 26.0 41.0 47 34.79725880125081 36.0 34.0 40.0 26.0 41.0 48 34.70773644180797 36.0 34.0 40.0 26.0 41.0 49 34.61211737547819 36.0 34.0 40.0 26.0 41.0 50 34.4943680726475 35.0 34.0 40.0 26.0 41.0 51 34.128543830256326 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 3.0 12 2.0 13 2.0 14 7.0 15 28.0 16 74.0 17 218.0 18 480.0 19 887.0 20 1453.0 21 2322.0 22 3458.0 23 5180.0 24 7463.0 25 10472.0 26 13570.0 27 16498.0 28 18322.0 29 20935.0 30 24167.0 31 28793.0 32 35464.0 33 46407.0 34 82559.0 35 134483.0 36 83615.0 37 109257.0 38 157931.0 39 295130.0 40 264.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.08412418618104 24.285049015595128 27.675483834585783 12.95534296363805 2 31.37616581441926 26.569017486988898 28.577301659199268 13.477515039392568 3 30.29653116205798 25.729776632958778 29.77736059797389 14.196331607009348 4 26.586117008020405 28.657796744906072 29.23617894830669 15.519907298766833 5 23.845918762722317 33.39008919037406 27.872401191145357 14.891590855758263 6 22.00808407143234 42.58462898587106 25.053708867920754 10.353578074775841 7 88.08290720963103 4.004562297739043 6.1681064827194785 1.7444240099104458 8 87.60766786181404 3.627736150752288 6.111532535476958 2.6530634519567124 9 82.38767524735184 5.358516925797174 8.664636553318672 3.5891712735323065 10 47.420428106519104 23.998086308922858 14.347134829723334 14.234350754834708 11 36.76187825504845 25.256083518426554 21.176938203422452 16.805100023102547 12 32.53393072511065 21.260707665496987 26.554009928636784 19.65135168075558 13 23.776338264907963 29.10011041924751 28.016382796426566 19.10716851941796 14 21.10863107419555 30.858359573821726 28.504719649714495 19.528289702268236 15 19.986975258448343 23.352670344882785 37.35872430296713 19.30163009370174 16 22.074844967374478 20.433563813047662 36.459907990024064 21.031683229553792 17 21.995532295356025 21.377948530441696 27.778353825472102 28.848165348730177 18 22.940007967649162 22.939553193153642 30.648890441185834 23.471548398011365 19 27.341315535278675 24.628494714610813 25.41725559963836 22.612934150472146 20 29.438189779216078 23.206596776922193 25.277366964816828 22.0778464790449 21 26.148987762927874 25.57469852998692 26.189553647928136 22.086760059157065 22 25.78780585858696 23.410972435208276 24.364270732714477 26.436950973490287 23 24.47287088224433 26.747016224534903 24.638317843714017 24.14179504950675 24 24.510799075170585 23.49947155203621 30.99642911066119 20.99330026213202 25 23.85938008778967 24.13206287530265 28.470429652752387 23.538127384155295 26 22.4630404767492 27.881951455551253 26.13634503195246 23.518663035747096 27 23.038784988075815 27.12611624399925 25.953798549451268 23.881300218473665 28 21.569863367550564 26.831422370903162 29.736612803175415 21.86210145837085 29 22.518250100505163 24.549272997491464 28.603041895645624 24.32943500635775 30 23.823634812441902 26.643327639556652 27.201426900457136 22.33161064754431 31 27.595534478273603 25.86939240308301 23.241796322875338 23.29327679576805 32 28.29452287788577 25.08827172958017 24.10250253309394 22.51470285944012 33 26.82914849842557 26.557920989298246 23.20623295732578 23.406697554950405 34 23.61607573268719 26.4958897481095 25.660378044942632 24.227656474260673 35 23.970526974494426 25.61881165605223 26.439679620463398 23.970981748989946 36 28.552834791340366 26.967218035265034 23.099997635172624 21.379949538221975 37 24.46313870804023 29.190428634057515 24.72154157639393 21.624891081508324 38 24.86397694839037 28.495624159804116 23.99108278169187 22.64931611011364 39 24.076034657454752 28.23458359937641 24.443947224329342 23.245434518839488 40 26.032201672478685 25.869756222679424 24.85197090170868 23.246071203133216 41 21.64008054965865 24.965391660891033 26.429492671763775 26.965035117686543 42 24.10423067617691 25.933242742253825 24.470778919564946 25.491747662004315 43 24.377459193084515 24.389556194665314 26.666975913323622 24.56600869892655 44 23.503291657798563 26.09978116251276 25.7497867107616 24.647140468927077 45 22.18189888361957 27.616363150168354 24.883350341899465 25.31838762431261 46 24.105958819259882 26.991502993325728 25.70312684752139 23.199411339893 47 23.744958824717173 25.62326844610831 27.084549855108847 23.547222874065664 48 24.67670081113579 23.66846575457094 27.65101696672688 24.00381646756639 49 23.71558039230667 24.36872752277056 27.481295124999317 24.43439695992345 50 22.71989711181813 26.423307738624725 27.22562090361873 23.631174245938407 51 21.929499038606718 27.273281270749088 25.43162647369675 25.365593216947445 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 680.0 1 1163.0 2 1646.0 3 5523.0 4 9400.0 5 6573.0 6 3746.0 7 3830.0 8 3914.0 9 4109.5 10 4305.0 11 4513.5 12 4722.0 13 4766.5 14 4811.0 15 4737.0 16 4663.0 17 4646.5 18 4630.0 19 4498.5 20 4367.0 21 4671.0 22 4975.0 23 4762.5 24 4550.0 25 5253.0 26 6357.0 27 6758.0 28 8329.0 29 9900.0 30 11995.0 31 14090.0 32 15499.5 33 16909.0 34 18385.5 35 19862.0 36 22087.5 37 24313.0 38 28212.5 39 32112.0 40 39448.0 41 46784.0 42 54171.0 43 61558.0 44 66361.0 45 71164.0 46 76232.0 47 81300.0 48 81924.0 49 82548.0 50 79749.0 51 76950.0 52 73381.5 53 69813.0 54 66955.5 55 64098.0 56 62427.0 57 60756.0 58 60106.5 59 59457.0 60 57506.0 61 55555.0 62 50677.5 63 45800.0 64 41797.5 65 37795.0 66 33550.5 67 29306.0 68 25920.0 69 22534.0 70 19567.5 71 16601.0 72 14733.5 73 12866.0 74 10509.5 75 6692.0 76 5231.0 77 3927.5 78 2624.0 79 1895.0 80 1166.0 81 838.5 82 511.0 83 398.5 84 286.0 85 233.0 86 180.0 87 125.0 88 70.0 89 43.5 90 17.0 91 14.0 92 11.0 93 7.0 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1099446.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.837206617372605 #Duplication Level Percentage of deduplicated Percentage of total 1 77.06549685469065 18.370261715957398 2 6.102509833221938 2.9093357555811874 3 2.216284753984621 1.5849011281099268 4 1.230739382719107 1.1734955583205189 5 0.947792986457062 1.129636862433681 6 0.7718742064440214 1.1039594964975992 7 0.6307401065551268 1.052455756927272 8 0.569529512962622 1.0860794140145287 9 0.48884150820832056 1.0487354430878806 >10 8.97785364743121 54.05577981318211 >50 0.9479976502022317 13.605285238732012 >100 0.0468811142672871 1.8723868995764947 >500 0.0030741714273630804 0.4819969603038745 >1k 0.0 0.0 >5k 3.8427142842038505E-4 0.5256899572755485 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5739 0.5219901659563089 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.095489910373043E-5 0.0 0.0 0.06385033917081875 0.0 2 9.095489910373043E-5 0.0 0.0 0.2011922368174517 0.0 3 9.095489910373043E-5 0.0 0.0 0.2982411141611321 0.0 4 9.095489910373043E-5 0.0 0.0 0.5426369280528557 0.0 5 9.095489910373043E-5 0.0 0.0 0.8741675352859531 0.0 6 9.095489910373043E-5 0.0 0.0 1.4935703981823574 0.0 7 9.095489910373043E-5 0.0 0.0 1.7654345916034075 0.0 8 9.095489910373043E-5 0.0 0.0 2.565291974321613 0.0 9 9.095489910373043E-5 0.0 0.0 2.9146497417790416 0.0 10 9.095489910373043E-5 0.0 0.0 3.4747500104598132 0.0 11 9.095489910373043E-5 0.0 0.0 3.9663612401154764 0.0 12 9.095489910373043E-5 0.0 0.0 4.365744202079957 0.0 13 9.095489910373043E-5 0.0 0.0 4.556112805904064 0.0 14 9.095489910373043E-5 0.0 0.0 4.640518952272326 0.0 15 9.095489910373043E-5 0.0 0.0 4.746936184223691 9.095489910373043E-5 16 9.095489910373043E-5 0.0 0.0 4.952039481702603 9.095489910373043E-5 17 9.095489910373043E-5 0.0 0.0 5.178517180470892 9.095489910373043E-5 18 9.095489910373043E-5 0.0 0.0 5.491947762782346 9.095489910373043E-5 19 9.095489910373043E-5 0.0 0.0 5.634474089677893 9.095489910373043E-5 20 9.095489910373043E-5 0.0 0.0 5.793190388613902 9.095489910373043E-5 21 9.095489910373043E-5 0.0 0.0 5.993836896036731 9.095489910373043E-5 22 9.095489910373043E-5 0.0 0.0 6.198667328818332 9.095489910373043E-5 23 9.095489910373043E-5 0.0 0.0 6.424417388393791 9.095489910373043E-5 24 9.095489910373043E-5 0.0 0.0 6.610420157060919 9.095489910373043E-5 25 9.095489910373043E-5 0.0 0.0 6.761860064068631 9.095489910373043E-5 26 9.095489910373043E-5 0.0 0.0 6.902021563587479 9.095489910373043E-5 27 9.095489910373043E-5 0.0 0.0 7.040000145527839 9.095489910373043E-5 28 9.095489910373043E-5 0.0 0.0 7.184527480203666 9.095489910373043E-5 29 9.095489910373043E-5 0.0 0.0 7.33796839499166 9.095489910373043E-5 30 9.095489910373043E-5 0.0 0.0 7.540070180800148 9.095489910373043E-5 31 9.095489910373043E-5 0.0 0.0 7.70906438333488 9.095489910373043E-5 32 9.095489910373043E-5 0.0 0.0 7.872237472326972 9.095489910373043E-5 33 9.095489910373043E-5 0.0 0.0 8.052055307855047 9.095489910373043E-5 34 9.095489910373043E-5 0.0 0.0 8.22768921802435 9.095489910373043E-5 35 9.095489910373043E-5 0.0 0.0 8.423060341299163 9.095489910373043E-5 36 9.095489910373043E-5 0.0 0.0 8.603605816020067 9.095489910373043E-5 37 9.095489910373043E-5 0.0 0.0 8.779876410483098 9.095489910373043E-5 38 9.095489910373043E-5 0.0 0.0 8.970063104508998 9.095489910373043E-5 39 9.095489910373043E-5 0.0 0.0 9.155793008478815 9.095489910373043E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGAACG 25 3.890694E-5 45.0 1 CGTTTTT 3235 0.0 39.714066 1 TAGTAGG 550 0.0 39.68182 2 GGGCGAT 2345 0.0 39.434967 7 CTAACGG 80 0.0 39.375004 2 TCGTAAG 40 3.4580444E-7 39.375004 1 TTAATCG 195 0.0 39.23077 20 TTACGGG 195 0.0 39.23077 3 GAGGGTA 290 0.0 38.793102 5 ACTACGG 70 0.0 38.571426 2 CGGTCTA 70 0.0 38.571426 31 ATAGGGC 575 0.0 37.95652 4 CATATGC 475 0.0 37.894737 33 CACGACC 405 0.0 37.77778 27 AGCATAT 465 0.0 37.741936 31 CGAGGGA 495 0.0 37.727272 4 AACGGGA 215 0.0 37.67442 4 GGCGATA 460 0.0 37.663044 8 TATGGGC 425 0.0 37.588238 4 TAAGGGA 905 0.0 37.541435 4 >>END_MODULE