SRR1546991_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546991_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1598191
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6728	0.42097596595150394	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3336	0.20873600214242224	No Hit
GAGCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCT	2016	0.12614261999973722	No Hit
GAGAGCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTT	1620	0.10136460535693168	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTCGTC	20	7.0341147E-4	45.0	14
CCGTAAC	20	7.0341147E-4	45.0	37
CGTACTT	20	7.0341147E-4	45.0	29
ATACGTG	20	7.0341147E-4	45.0	1
TGTACCC	25	3.8914914E-5	45.0	31
AATACGG	65	0.0	44.999996	2
TAGTACG	65	0.0	44.999996	1
TAATGCG	105	0.0	42.857143	1
AGGGTAC	745	0.0	42.583893	6
TGCGTTT	90	0.0	42.5	28
ACGTTAG	85	0.0	42.35294	1
AACGGGA	455	0.0	41.538464	4
TAACGAG	65	0.0	41.53846	1
CGTTAGG	185	0.0	41.351353	2
CTCATGC	305	0.0	41.311478	23
CGTTTTT	5000	0.0	41.085003	1
ACACGAC	615	0.0	40.97561	26
CGTAAGG	165	0.0	40.90909	2
CACGACC	615	0.0	40.609756	27
CGCATCG	50	1.0822987E-9	40.5	21