SRR1546989_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546989_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1797117
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9036	0.5028053265313277	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTAAT	25	3.8916856E-5	45.000004	6
CTATACG	20	7.034349E-4	45.0	1
AATACCG	20	7.034349E-4	45.0	1
CGAATAT	105	0.0	40.714287	14
CATATGC	910	0.0	39.56044	33
CGATACA	40	3.4596815E-7	39.375	10
CGTAAGG	230	0.0	39.130432	2
CGTTTTT	5655	0.0	39.03183	1
AGGGCGA	2390	0.0	38.3159	6
CGTTAGG	225	0.0	38.0	2
GGGCGAT	4425	0.0	37.98305	7
CACGACC	740	0.0	37.702705	27
ATATGCT	950	0.0	37.657894	34
TATTTCG	30	1.140178E-4	37.499996	1
AACGTCG	30	1.140178E-4	37.499996	32
AACCGTA	30	1.140178E-4	37.499996	43
TTATCCG	30	1.140178E-4	37.499996	1
CGGTAGT	555	0.0	37.2973	12
GCGATAT	230	0.0	37.173912	9
TAGACGG	280	0.0	36.964283	2