##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546988_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1267407 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.582923244072347 31.0 31.0 33.0 30.0 34.0 2 31.967766471228263 31.0 31.0 34.0 30.0 34.0 3 32.018277475191475 33.0 31.0 34.0 30.0 34.0 4 35.73829480190657 37.0 35.0 37.0 33.0 37.0 5 35.71230946333735 37.0 35.0 37.0 33.0 37.0 6 35.759939782563926 37.0 35.0 37.0 33.0 37.0 7 36.102054036311934 37.0 35.0 37.0 35.0 37.0 8 36.03490907025131 37.0 35.0 37.0 35.0 37.0 9 37.79664622335209 39.0 38.0 39.0 35.0 39.0 10 37.27645105321337 39.0 37.0 39.0 34.0 39.0 11 37.06203374290973 39.0 37.0 39.0 33.0 39.0 12 36.758615819543365 39.0 35.0 39.0 33.0 39.0 13 36.6998241291077 39.0 35.0 39.0 33.0 39.0 14 37.82916853070876 40.0 36.0 41.0 33.0 41.0 15 37.88181381355792 40.0 36.0 41.0 33.0 41.0 16 37.907780215826484 40.0 36.0 41.0 33.0 41.0 17 37.83675015208217 40.0 36.0 41.0 33.0 41.0 18 37.71304008893749 39.0 36.0 41.0 33.0 41.0 19 37.637282262130476 39.0 36.0 41.0 33.0 41.0 20 37.4839723940297 39.0 35.0 41.0 33.0 41.0 21 37.42485957549548 39.0 35.0 41.0 32.0 41.0 22 37.33321261441668 39.0 35.0 41.0 32.0 41.0 23 37.222781632103974 39.0 35.0 41.0 32.0 41.0 24 37.12120179232085 39.0 35.0 41.0 32.0 41.0 25 37.00275049766965 39.0 35.0 41.0 32.0 41.0 26 36.86059884472786 39.0 35.0 41.0 31.0 41.0 27 36.773033445452015 39.0 35.0 41.0 31.0 41.0 28 36.78020872537393 39.0 35.0 41.0 31.0 41.0 29 36.77093861719243 39.0 35.0 41.0 31.0 41.0 30 36.67992760021051 39.0 35.0 41.0 31.0 41.0 31 36.547704880910395 39.0 35.0 41.0 31.0 41.0 32 36.39255187954619 39.0 35.0 41.0 30.0 41.0 33 36.202515845344074 39.0 35.0 41.0 30.0 41.0 34 35.94833940478473 39.0 35.0 41.0 29.0 41.0 35 35.80054867931138 39.0 35.0 41.0 28.0 41.0 36 35.670612518314954 39.0 35.0 41.0 27.0 41.0 37 35.60192582177627 38.0 35.0 41.0 27.0 41.0 38 35.471891034213954 38.0 35.0 41.0 26.0 41.0 39 35.39130602876582 38.0 35.0 41.0 26.0 41.0 40 35.26920318413895 38.0 35.0 41.0 25.0 41.0 41 35.19533188628436 38.0 35.0 40.0 25.0 41.0 42 35.10669500799664 38.0 34.0 40.0 24.0 41.0 43 34.99474438755664 38.0 34.0 40.0 24.0 41.0 44 34.847149337190025 38.0 34.0 40.0 24.0 41.0 45 34.739741850881366 37.0 34.0 40.0 23.0 41.0 46 34.66929881245724 37.0 34.0 40.0 23.0 41.0 47 34.610510278071686 37.0 34.0 40.0 23.0 41.0 48 34.50137801037867 37.0 34.0 40.0 23.0 41.0 49 34.40826900908706 37.0 34.0 40.0 23.0 41.0 50 34.29528714927407 36.0 34.0 40.0 23.0 41.0 51 33.930802812356255 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 1.0 11 0.0 12 3.0 13 7.0 14 13.0 15 36.0 16 106.0 17 267.0 18 519.0 19 1071.0 20 1837.0 21 2892.0 22 4515.0 23 6811.0 24 10342.0 25 15568.0 26 20667.0 27 23568.0 28 23705.0 29 25061.0 30 28102.0 31 33328.0 32 39910.0 33 50985.0 34 83643.0 35 119764.0 36 96683.0 37 126029.0 38 188006.0 39 363753.0 40 213.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.337667379144975 24.01919825281066 26.405487739928844 15.237646628115515 2 35.817144768807495 24.70776948525612 25.70634373961955 13.768742006316833 3 29.74900722498771 25.477687909250935 31.113683291949627 13.659621573811728 4 25.42364055114103 28.169404145629624 31.062160773926607 15.34479452930274 5 23.041059422900457 32.102710494734524 29.84234740694978 15.013882675415239 6 21.83126651501846 40.653712658995886 27.486829408390516 10.028191417595139 7 86.71444926531099 3.171041346623461 8.612466240126494 1.5020431479390597 8 86.30061219481982 2.778744318123539 8.484093901958882 2.4365495850977625 9 80.81523930355442 4.597497094461369 11.170602655658364 3.4166609463258446 10 39.89057974273458 26.260230533680186 18.792937075461946 15.056252648123294 11 31.47757586947208 27.025888290028384 25.06156270243103 16.43497313806851 12 26.97902094591556 23.339779565680164 29.762578240454722 19.918621247949552 13 23.541530068872905 26.499695835670785 31.853382536154527 18.105391559301786 14 22.095191205350766 27.228980114517277 32.03856377627707 18.637264903854877 15 22.000272998334395 23.782099988401516 35.57191967536868 18.645707337895402 16 23.941559420138915 23.201071163406862 34.28567145360567 18.571697962848557 17 23.453791875853614 23.691600251537192 30.524606539178023 22.33000133343117 18 24.664531598768193 23.20170237342858 31.623306483237034 20.51045954456619 19 26.143535580914417 26.064160920682937 28.11385766371813 19.678445834684517 20 27.740339133364422 25.130048989787813 27.56699308114915 19.56261879569862 21 26.605502415561848 26.131621491754427 28.39143227077016 18.871443821913562 22 25.4634856837622 23.457894740994803 28.44918798775768 22.629431587485314 23 23.47201806523082 26.813249413960943 28.130979235557323 21.58375328525091 24 22.972888740554534 25.476504390460207 31.670489432360714 19.88011743662454 25 23.861001241116707 25.035525289035014 30.0798401776225 21.023633292225778 26 21.937151996162243 27.233950893438337 29.033688467871805 21.795208642527616 27 22.69231588589932 25.39247455631853 29.13894273899387 22.776266818788283 28 21.65973519161564 26.760780080905345 30.849127391595598 20.730357335883422 29 22.60370977910016 25.034736276507864 29.871146364190825 22.49040758020115 30 23.733575717981676 25.116004566804506 29.71878804519779 21.431631670016024 31 25.398313249019456 25.243824596203112 27.544269520367177 21.813592634410256 32 25.25771121668099 25.02077075477727 27.245628278840183 22.475889749701555 33 24.876302561055763 25.121527654494567 27.047349430766914 22.954820353682756 34 22.17551268061483 27.614886141547267 28.172796899496372 22.036804278341528 35 22.528832490273448 27.675166698621673 28.40792263258764 21.38807817851724 36 24.79629669080256 28.539372119611144 25.91566876307295 20.748662426513345 37 23.162725154587278 28.675003373028552 26.955823977617293 21.206447494766874 38 22.93438492922952 29.409337332048818 26.88599636896435 20.770281369757306 39 23.213300857577714 27.76574533673871 26.610236490724766 22.41071731495881 40 24.127450771535898 26.78058429533686 27.282790768869035 21.809174164258206 41 21.069159315042445 26.882840318855745 27.652522039092414 24.3954783270094 42 23.19807291580368 26.940674937095977 26.934047231867904 22.927204915232437 43 22.543350320773044 25.640697897360514 28.20609322814218 23.60985855372426 44 22.63724281150412 26.892387370434278 27.734973848179788 22.735395969881814 45 21.983545932758773 26.82918746700941 27.258883689296336 23.92838291093548 46 23.944320963983944 26.300706876323076 27.04608701072347 22.70888514896951 47 22.720641435624074 26.086726678959483 28.394746123384202 22.797885762032244 48 23.1607526232694 25.495440691111853 28.704512441544033 22.639294244074712 49 23.60772821990095 25.413856795804346 27.79904166538452 23.179373318910184 50 22.283528495581926 26.390969909429252 28.374310698930966 22.951190896057856 51 22.000983109608832 26.72630023346881 27.43349216155505 23.83922449536731 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 651.0 1 1101.5 2 1552.0 3 9021.0 4 16490.0 5 11674.5 6 6859.0 7 6861.0 8 6863.0 9 7303.5 10 7744.0 11 7772.0 12 7800.0 13 7845.5 14 7891.0 15 7862.5 16 7834.0 17 7405.0 18 6976.0 19 7018.5 20 7061.0 21 6990.0 22 6919.0 23 7231.5 24 7544.0 25 7923.0 26 9436.5 27 10571.0 28 11998.5 29 13426.0 30 16075.5 31 18725.0 32 20082.5 33 21440.0 34 24432.0 35 27424.0 36 31109.0 37 34794.0 38 38256.5 39 41719.0 40 49978.5 41 58238.0 42 65694.0 43 73150.0 44 81137.0 45 89124.0 46 94646.0 47 100168.0 48 98545.0 49 96922.0 50 94940.5 51 92959.0 52 89375.5 53 85792.0 54 79837.5 55 73883.0 56 69491.0 57 65099.0 58 61202.0 59 57305.0 60 53771.0 61 50237.0 62 46280.5 63 42324.0 64 37579.0 65 32834.0 66 28702.0 67 24570.0 68 21349.0 69 18128.0 70 15619.5 71 13111.0 72 11143.0 73 9175.0 74 8026.5 75 5678.0 76 4478.0 77 3467.5 78 2457.0 79 1717.0 80 977.0 81 782.0 82 587.0 83 417.0 84 247.0 85 170.0 86 93.0 87 77.0 88 61.0 89 37.5 90 14.0 91 11.5 92 9.0 93 5.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1267407.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.115540722684194 #Duplication Level Percentage of deduplicated Percentage of total 1 73.08943668421918 22.7421734354587 2 6.729007817421509 4.187534335324785 3 3.192778227345029 2.9803506285436114 4 2.160708167003724 2.6892641184096275 5 1.6278103925839553 2.53251002796273 6 1.3532730094693908 2.5264692861032527 7 1.1334769497834793 2.4688123732448206 8 0.9635310953134569 2.3984632827038697 9 0.854707167652856 2.3935208112965256 >10 8.798946071918149 51.567806816592864 >50 0.07563193592303857 1.5265155675938802 >100 0.01992609319203554 1.147179614740051 >500 5.10925449470866E-4 0.10079155512954932 >1k 0.0 0.0 >5k 2.55462724735433E-4 0.7386081468957195 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9292 0.7331504402295395 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.044815911542227554 0.0 2 0.0 0.0 0.0 0.11527473021689165 0.0 3 0.0 0.0 0.0 0.19457048919565695 0.0 4 0.0 0.0 0.0 0.3527675008896116 0.0 5 0.0 0.0 0.0 0.6063561271162302 0.0 6 0.0 0.0 0.0 1.308735078786846 0.0 7 0.0 0.0 0.0 1.6760204101760523 0.0 8 0.0 0.0 0.0 2.6798810484714064 0.0 9 0.0 0.0 0.0 3.281345297919295 0.0 10 0.0 0.0 0.0 4.0252263085181 0.0 11 0.0 0.0 0.0 4.524907941963394 0.0 12 0.0 0.0 0.0 4.940480840014297 0.0 13 0.0 0.0 0.0 5.190913416132308 0.0 14 0.0 0.0 0.0 5.33766974618256 0.0 15 0.0 0.0 0.0 5.454759205211901 0.0 16 0.0 0.0 0.0 5.637336703994849 0.0 17 0.0 0.0 0.0 5.828119933060178 0.0 18 0.0 0.0 0.0 6.078947015441764 0.0 19 0.0 0.0 0.0 6.239116558453598 0.0 20 0.0 0.0 0.0 6.4083597455276795 0.0 21 0.0 0.0 0.0 6.608295519907969 0.0 22 0.0 0.0 0.0 6.806653269233956 0.0 23 0.0 0.0 0.0 7.038780754722043 0.0 24 0.0 0.0 0.0 7.2346136639611425 0.0 25 0.0 0.0 0.0 7.407959716176414 0.0 26 0.0 0.0 0.0 7.57104860553871 0.0 27 0.0 0.0 0.0 7.743447842721399 0.0 28 0.0 0.0 0.0 7.916557191178525 0.0 29 0.0 0.0 0.0 8.105762395189549 0.0 30 0.0 0.0 0.0 8.358956515152592 0.0 31 0.0 0.0 0.0 8.561890537136058 0.0 32 0.0 0.0 0.0 8.790309663746532 0.0 33 0.0 0.0 0.0 9.004447663615554 0.0 34 0.0 0.0 0.0 9.212983674541801 0.0 35 0.0 0.0 0.0 9.439903677350685 0.0 36 0.0 0.0 0.0 9.658460147371759 0.0 37 0.0 0.0 0.0 9.870546714670189 0.0 38 0.0 0.0 0.0 10.129263922323295 0.0 39 0.0 0.0 0.0 10.455520602300602 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGAATA 20 7.033561E-4 45.0 27 CGTTTTT 6960 0.0 42.21983 1 TCGATAG 50 1.0822987E-9 40.5 1 GGGCGAT 3265 0.0 39.831547 7 GACGGGA 495 0.0 39.545452 4 GGCGATT 840 0.0 38.839287 8 AGGGCGA 1555 0.0 38.778137 6 TACGGGA 210 0.0 38.57143 4 TCGTTAG 35 6.2487998E-6 38.571426 1 TTACGGG 240 0.0 38.437496 3 GACACGA 1315 0.0 38.15589 25 ACGGGAT 230 0.0 38.152172 5 TCAAGCG 1340 0.0 38.11567 17 CACGACC 1325 0.0 38.037735 27 ACACGAC 1325 0.0 37.867924 26 GCGAGAC 1345 0.0 37.80669 21 TAGGGCG 560 0.0 37.767857 5 ACGACCA 1350 0.0 37.5 28 CGTTCGA 30 1.13998816E-4 37.499996 14 TAATGCG 30 1.13998816E-4 37.499996 1 >>END_MODULE