##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546986_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3134070 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.59630480493416 31.0 31.0 33.0 30.0 34.0 2 31.981505199309524 31.0 31.0 34.0 30.0 34.0 3 32.012625116860825 33.0 31.0 34.0 30.0 34.0 4 35.74777780968517 37.0 35.0 37.0 33.0 37.0 5 35.718938632512995 37.0 35.0 37.0 33.0 37.0 6 35.77387550373795 37.0 35.0 37.0 33.0 37.0 7 36.13544209286965 37.0 35.0 37.0 35.0 37.0 8 36.07550597146841 37.0 35.0 37.0 35.0 37.0 9 37.838421286059344 39.0 38.0 39.0 35.0 39.0 10 37.23497177791179 39.0 37.0 39.0 34.0 39.0 11 37.122922270402384 39.0 37.0 39.0 33.0 39.0 12 36.9493980670502 39.0 37.0 39.0 33.0 39.0 13 36.92887618974688 39.0 37.0 39.0 33.0 39.0 14 38.05502876451388 40.0 37.0 41.0 33.0 41.0 15 38.097914213785906 40.0 37.0 41.0 33.0 41.0 16 38.121940160877074 40.0 37.0 41.0 33.0 41.0 17 38.04640196294275 40.0 37.0 41.0 33.0 41.0 18 37.91533979777095 39.0 37.0 41.0 33.0 41.0 19 37.81876218463531 40.0 37.0 41.0 33.0 41.0 20 37.63855593525352 40.0 35.0 41.0 33.0 41.0 21 37.594392594932465 40.0 35.0 41.0 33.0 41.0 22 37.51412508335806 39.0 35.0 41.0 33.0 41.0 23 37.40421879536832 39.0 35.0 41.0 32.0 41.0 24 37.30607165762092 39.0 35.0 41.0 32.0 41.0 25 37.21673319357895 39.0 35.0 41.0 32.0 41.0 26 37.09151263373186 39.0 35.0 41.0 32.0 41.0 27 37.01283347213049 39.0 35.0 41.0 32.0 41.0 28 37.02035819238243 39.0 35.0 41.0 32.0 41.0 29 36.99996968797761 39.0 35.0 41.0 31.0 41.0 30 36.88886591556666 39.0 35.0 41.0 31.0 41.0 31 36.746702211501336 39.0 35.0 41.0 31.0 41.0 32 36.560570121279994 39.0 35.0 41.0 30.0 41.0 33 36.3285277610264 39.0 35.0 41.0 30.0 41.0 34 36.02832738260473 39.0 35.0 41.0 28.0 41.0 35 35.86368747347698 39.0 35.0 41.0 27.0 41.0 36 35.73525511555262 39.0 35.0 41.0 26.0 41.0 37 35.66650202452402 39.0 35.0 41.0 26.0 41.0 38 35.5433943721742 39.0 35.0 41.0 25.0 41.0 39 35.44936615965821 39.0 35.0 41.0 25.0 41.0 40 35.33829461371316 39.0 35.0 41.0 24.0 41.0 41 35.261370039597075 38.0 35.0 41.0 24.0 41.0 42 35.17999693689037 38.0 35.0 41.0 24.0 41.0 43 35.075361750056636 38.0 34.0 41.0 23.0 41.0 44 34.92267371181882 38.0 34.0 40.0 23.0 41.0 45 34.82293152354606 38.0 34.0 40.0 23.0 41.0 46 34.768171738346624 38.0 34.0 40.0 23.0 41.0 47 34.7159415711838 38.0 34.0 40.0 23.0 41.0 48 34.61561930652474 38.0 34.0 40.0 23.0 41.0 49 34.51889172864678 37.0 34.0 40.0 23.0 41.0 50 34.425676516478575 37.0 34.0 40.0 23.0 41.0 51 34.06452408529484 37.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 4.0 12 4.0 13 11.0 14 23.0 15 73.0 16 202.0 17 550.0 18 1185.0 19 2270.0 20 4076.0 21 6715.0 22 10137.0 23 15485.0 24 23898.0 25 38047.0 26 54724.0 27 63478.0 28 63388.0 29 63577.0 30 68204.0 31 78433.0 32 94451.0 33 119179.0 34 183625.0 35 252403.0 36 231722.0 37 303154.0 38 472203.0 39 982231.0 40 616.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.219423943945095 23.47832052251545 26.429530929430424 16.872724604109035 2 35.188429103370375 24.732982990169333 26.436103852179432 13.642484054280853 3 28.797410396066457 24.89628502235113 32.87590896182919 13.430395619753227 4 24.51853340863478 27.76960948542949 32.70258800856394 15.009269097371789 5 22.797065796233014 31.32686889571707 31.23006186843306 14.646003439616855 6 21.086191437970434 40.126831883142366 28.299655081092638 10.48732159779456 7 86.03515556448963 2.530575258370107 9.976133270794845 1.4581359063454231 8 85.673389554158 2.242260064389117 9.747548714610714 2.3368016668421574 9 79.65204989039812 4.215796073476342 12.782867006799464 3.349287029326084 10 31.96128357056479 28.42284952154866 25.389381858095067 14.226485049791485 11 27.764280950967912 26.004524468183543 29.02506963788301 17.206124942965538 12 24.821845076848952 23.618840676819598 31.71246972786185 19.846844518469595 13 23.230368179396123 24.856305060193296 33.77735660020357 18.135970160207016 14 21.321444639079534 25.90452670170098 33.81082745439636 18.96320120482312 15 21.250961210183565 24.240332857913195 36.217282957942864 18.291422973960376 16 24.003930990692613 23.136369002606834 34.60426857089982 18.25543143580073 17 22.87638757270897 23.613544049750004 32.49321170235508 21.01685667518594 18 23.778888155018873 22.72233868420297 33.212531947276226 20.28624121350193 19 24.71093498230735 26.047344188228088 30.152581148474667 19.089139680989895 20 26.238373744045283 25.102885385457245 29.70386749498256 18.954873375514904 21 25.263826270632116 25.562798533536263 30.952339928591254 18.221035267240364 22 24.200735784459184 22.56331224254723 30.979812193090773 22.25613977990281 23 22.039360958753313 26.446027051086922 30.82649717460044 20.688114815559324 24 21.063058578780947 25.573998028123174 33.57436177239181 19.78858162070407 25 22.706991228657945 25.372694292086646 31.39763949114091 20.5226749881145 26 21.12658619622408 26.666985740586526 30.840791686209947 21.365636376979456 27 21.430280753142082 24.923916823810572 31.468186734820858 22.17761568822649 28 20.336846337190938 26.89984588729671 32.045008567134744 20.718299208377605 29 21.51984480244538 24.910611441352618 31.256194022469185 22.313349733732814 30 22.9597296805751 24.53665680728254 31.823730803715293 20.679882708427062 31 23.698928230703206 25.644290012667238 29.707441122884937 20.94934063374462 32 23.271113918961607 25.507854004537233 29.470879718704435 21.750152357796733 33 22.978491227062573 25.56330905180803 28.729288114177407 22.728911606951982 34 20.937088195222188 27.667729182819784 30.328199433962865 21.066983187995163 35 21.25169508019923 27.8195445538868 29.558688861448534 21.37007150446544 36 22.877536238820447 28.594160309118816 28.15192385619977 20.376379595860975 37 22.588231915687906 28.362353106344145 28.006809037449703 21.04260594051824 38 22.396915193342842 27.633045847731548 29.556519158793513 20.413519800132097 39 22.96065499494268 26.75080645933243 27.84641057793859 22.442127967786295 40 23.82850414955633 25.883723082126437 29.553838937866733 20.733933830450503 41 20.98070560006637 26.485560309756963 29.447810674298914 23.085923415877758 42 22.83369548223237 26.826044089634244 28.26267441378144 22.077586014351944 43 22.215521669905268 25.580188062168364 29.673364028244425 22.530926239681946 44 22.468738732702207 26.78928677406695 28.667196329373628 22.07477816385722 45 21.505007865172125 26.149607379541617 28.76875755806348 23.57662719722278 46 22.797608221896766 26.191788951746453 28.640170768361905 22.370432057994876 47 21.994754424757584 26.606010714502226 29.885420555380065 21.513814305360125 48 22.40310522738803 25.949675661360466 29.401544955919938 22.245674155331567 49 22.483767114327378 25.856155095450962 29.187446355697222 22.472631434524438 50 21.47581260150539 26.01447957448302 30.222936947802697 22.28677087620889 51 21.49045809442674 26.006343189526714 29.179884303796662 23.323314412249886 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1354.0 1 2340.5 2 3327.0 3 30149.0 4 56971.0 5 39585.0 6 22199.0 7 21937.5 8 21676.0 9 22150.0 10 22624.0 11 22590.0 12 22556.0 13 22138.0 14 21720.0 15 20965.5 16 20211.0 17 19424.5 18 18638.0 19 18371.5 20 18105.0 21 17830.0 22 17555.0 23 18391.0 24 19227.0 25 21199.5 26 26786.5 27 30401.0 28 34713.0 29 39025.0 30 45450.0 31 51875.0 32 60107.0 33 68339.0 34 78187.0 35 88035.0 36 94059.5 37 100084.0 38 110024.5 39 119965.0 40 132319.5 41 144674.0 42 156255.0 43 167836.0 44 184849.5 45 201863.0 46 219236.5 47 236610.0 48 248341.0 49 260072.0 50 256121.0 51 252170.0 52 236234.5 53 220299.0 54 200538.5 55 180778.0 56 167489.0 57 154200.0 58 143278.0 59 132356.0 60 120895.0 61 109434.0 62 98329.5 63 87225.0 64 75844.0 65 64463.0 66 53930.0 67 43397.0 68 36307.5 69 29218.0 70 24247.5 71 19277.0 72 16775.5 73 14274.0 74 13509.0 75 10651.5 76 8559.0 77 6397.5 78 4236.0 79 3013.0 80 1790.0 81 1297.5 82 805.0 83 616.0 84 427.0 85 319.5 86 212.0 87 128.5 88 45.0 89 36.0 90 27.0 91 18.0 92 9.0 93 8.0 94 7.0 95 5.0 96 3.0 97 1.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3134070.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.106175502334317 #Duplication Level Percentage of deduplicated Percentage of total 1 75.31374685896502 19.661538932385202 2 6.66567322873646 3.4803047030121084 3 2.710107467445395 2.122516235259488 4 1.5924159442852688 1.662875604569066 5 1.1774877428812587 1.5369850833752823 6 0.9198203895767013 1.440779551254893 7 0.7630761061386857 1.3944699123946092 8 0.6954415755470906 1.452425585828179 9 0.5932662720382107 1.3939122075700625 >10 9.07345366871123 54.61910074335804 >50 0.4440675035239335 7.082892520406263 >100 0.04699923917825767 2.098620429540799 >500 0.002962668648306833 0.514208345545188 >1k 0.0013578897971372938 0.45072185515048924 >5k 0.0 0.0 >10k+ 1.2344452701248127E-4 1.0886482903502557 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 33781 1.0778636086622189 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.572217595650385E-5 0.0 0.0 0.06579304227410364 0.0 2 9.572217595650385E-5 0.0 0.0 0.19230585149661622 0.0 3 9.572217595650385E-5 0.0 0.0 0.31026747966701446 0.0 4 9.572217595650385E-5 0.0 0.0 0.5001483693727325 0.0 5 9.572217595650385E-5 0.0 0.0 0.8676258028697509 0.0 6 9.572217595650385E-5 0.0 0.0 1.6456237416522286 0.0 7 9.572217595650385E-5 0.0 0.0 2.0673118341326133 0.0 8 9.572217595650385E-5 0.0 0.0 3.0409339931781996 0.0 9 9.572217595650385E-5 0.0 0.0 3.5873799883218944 0.0 10 9.572217595650385E-5 0.0 0.0 4.363591113153184 0.0 11 9.572217595650385E-5 0.0 0.0 4.8670259439004235 0.0 12 9.572217595650385E-5 0.0 0.0 5.261528938409161 0.0 13 9.572217595650385E-5 0.0 0.0 5.496590695166349 0.0 14 9.572217595650385E-5 0.0 0.0 5.639918699965221 0.0 15 9.572217595650385E-5 0.0 0.0 5.769239359682458 0.0 16 9.572217595650385E-5 0.0 0.0 5.981455423778026 0.0 17 9.572217595650385E-5 0.0 0.0 6.205126241596391 0.0 18 9.572217595650385E-5 0.0 0.0 6.505534337139885 0.0 19 9.572217595650385E-5 0.0 0.0 6.665645630123131 0.0 20 9.572217595650385E-5 0.0 0.0 6.842029693018982 0.0 21 9.572217595650385E-5 0.0 0.0 7.048757685693045 0.0 22 9.572217595650385E-5 0.0 0.0 7.270577874776249 0.0 23 9.572217595650385E-5 0.0 0.0 7.519200273127275 0.0 24 9.572217595650385E-5 0.0 0.0 7.722897063562716 0.0 25 9.572217595650385E-5 0.0 0.0 7.913767082419985 0.0 26 9.572217595650385E-5 0.0 0.0 8.09273564406666 0.0 27 9.572217595650385E-5 0.0 0.0 8.281850756364728 0.0 28 9.572217595650385E-5 0.0 0.0 8.474667126133111 0.0 29 9.572217595650385E-5 0.0 0.0 8.685734524117203 0.0 30 9.572217595650385E-5 0.0 0.0 8.967572517525134 0.0 31 9.572217595650385E-5 0.0 0.0 9.190222298799963 0.0 32 9.572217595650385E-5 0.0 0.0 9.433101366593599 0.0 33 9.572217595650385E-5 0.0 0.0 9.665100013720178 0.0 34 9.572217595650385E-5 0.0 0.0 9.89020666417789 0.0 35 9.572217595650385E-5 0.0 0.0 10.131554177156222 0.0 36 9.572217595650385E-5 0.0 0.0 10.355767420638339 0.0 37 9.572217595650385E-5 0.0 0.0 10.593381768754368 0.0 38 9.572217595650385E-5 0.0 0.0 10.860414732281027 0.0 39 9.572217595650385E-5 0.0 0.0 11.232008219344175 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 22030 0.0 43.10032 1 CGTTCGA 85 0.0 42.35294 14 CGATCGA 65 0.0 41.538464 10 ACGGGTA 625 0.0 39.960003 5 CGGGTAT 555 0.0 38.10811 6 TACGGGA 975 0.0 38.076927 4 GGGCGAT 8305 0.0 38.06442 7 AACGGGC 485 0.0 38.041237 4 TACGGGT 545 0.0 37.98165 4 ACGGGAT 1015 0.0 37.906403 5 GGCGATA 1610 0.0 37.59317 8 AGGGCGA 4155 0.0 37.527073 6 AACACGT 2870 0.0 37.003483 41 ATAGGGC 1575 0.0 36.857143 4 ACACGAC 3155 0.0 36.798733 26 CACGACC 3175 0.0 36.77953 27 GCGAGAC 3195 0.0 36.69014 21 TCAAGCG 3190 0.0 36.46552 17 GACACGA 3185 0.0 36.381474 25 ACGACCA 3185 0.0 36.381474 28 >>END_MODULE