##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546985_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 980605 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.495869386756134 31.0 31.0 33.0 30.0 34.0 2 31.857904049030957 31.0 31.0 34.0 30.0 34.0 3 31.912326573900806 33.0 31.0 34.0 30.0 34.0 4 35.63735551011875 37.0 35.0 37.0 33.0 37.0 5 35.599620642358545 37.0 35.0 37.0 33.0 37.0 6 35.65686081551695 37.0 35.0 37.0 33.0 37.0 7 36.05005991199311 37.0 35.0 37.0 35.0 37.0 8 35.978590767944276 37.0 35.0 37.0 35.0 37.0 9 37.73051024622554 39.0 38.0 39.0 35.0 39.0 10 37.162539452684825 39.0 37.0 39.0 33.0 39.0 11 36.93201951856252 39.0 37.0 39.0 33.0 39.0 12 36.507056358064666 39.0 35.0 39.0 32.0 39.0 13 36.362146837921486 39.0 35.0 39.0 32.0 39.0 14 37.45550960886391 40.0 35.0 41.0 32.0 41.0 15 37.56590472208484 40.0 35.0 41.0 32.0 41.0 16 37.64607665675782 40.0 35.0 41.0 33.0 41.0 17 37.613752734281384 40.0 35.0 41.0 33.0 41.0 18 37.50171679728331 39.0 36.0 41.0 33.0 41.0 19 37.41413107214424 39.0 35.0 41.0 32.0 41.0 20 37.22722604922471 39.0 35.0 41.0 32.0 41.0 21 37.16093432115888 39.0 35.0 41.0 32.0 41.0 22 37.06015775975036 39.0 35.0 41.0 32.0 41.0 23 36.96237526832925 39.0 35.0 41.0 32.0 41.0 24 36.84262164684047 38.0 35.0 41.0 31.0 41.0 25 36.73064587678015 38.0 35.0 41.0 31.0 41.0 26 36.55326456626266 38.0 35.0 41.0 31.0 41.0 27 36.464864038017346 38.0 35.0 40.0 31.0 41.0 28 36.481190693500444 38.0 35.0 41.0 31.0 41.0 29 36.48342706798354 38.0 35.0 41.0 31.0 41.0 30 36.41112884392798 38.0 35.0 40.0 31.0 41.0 31 36.307131821681516 38.0 35.0 40.0 30.0 41.0 32 36.13440682027932 38.0 35.0 41.0 30.0 41.0 33 35.96035508691063 38.0 35.0 41.0 30.0 41.0 34 35.75198780344787 38.0 35.0 41.0 29.0 41.0 35 35.61020492451089 38.0 35.0 41.0 28.0 41.0 36 35.478279225580124 38.0 35.0 41.0 27.0 41.0 37 35.39806955909872 38.0 35.0 41.0 27.0 41.0 38 35.288553495036226 38.0 35.0 40.0 26.0 41.0 39 35.195614951993925 38.0 35.0 40.0 26.0 41.0 40 35.07520051396842 38.0 34.0 40.0 25.0 41.0 41 35.01490304454903 38.0 34.0 40.0 25.0 41.0 42 34.91843504775113 38.0 34.0 40.0 24.0 41.0 43 34.801447065842005 37.0 34.0 40.0 24.0 41.0 44 34.656512051233676 37.0 34.0 40.0 24.0 41.0 45 34.567355867041265 37.0 34.0 40.0 23.0 41.0 46 34.492520433813816 37.0 34.0 40.0 23.0 41.0 47 34.42606146205659 37.0 34.0 40.0 23.0 41.0 48 34.31732042973471 36.0 34.0 40.0 23.0 41.0 49 34.231078772798426 36.0 34.0 40.0 23.0 41.0 50 34.11903059845707 36.0 34.0 40.0 23.0 41.0 51 33.74249774373983 35.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 5.0 14 10.0 15 41.0 16 77.0 17 206.0 18 444.0 19 878.0 20 1492.0 21 2472.0 22 3811.0 23 5503.0 24 8444.0 25 12396.0 26 16173.0 27 18029.0 28 18851.0 29 20030.0 30 23057.0 31 27286.0 32 33001.0 33 42502.0 34 70535.0 35 115379.0 36 73990.0 37 93687.0 38 135824.0 39 256248.0 40 230.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.76425777963604 25.10225829972313 27.34128420719862 13.792199713442214 2 33.32585495688886 25.6872033081618 27.390947425313968 13.595994309635378 3 28.719209059713137 25.483757476251906 32.22479999592088 13.572233468114073 4 24.68159962472147 28.715333901010094 31.40520393022675 15.197862544041687 5 22.97520408319354 32.201854977284434 30.747854640757495 14.075086298764539 6 20.74046124586352 41.43360476440564 27.23145405132546 10.594479938405373 7 86.09460486128462 3.331514728152518 8.706563804997936 1.867316605564932 8 85.5720703035371 2.946752260084336 8.142830191565412 3.338347244813151 9 79.99724659776362 4.797446474370414 11.502082897802888 3.703224030063073 10 42.72862161624712 23.607772752535425 18.296051927126623 15.367553704090842 11 34.195114240698345 25.779493272010644 23.912176666445713 16.113215820845294 12 30.45160895569572 21.70853707660067 28.6049938558339 19.234860111869715 13 21.993871130577553 30.20910560317355 30.458645428077563 17.338377838171333 14 19.35590783240958 31.871140775337675 29.854528581844882 18.91842281040786 15 18.00612886942245 24.898302578510208 39.75759862533844 17.337969926728906 16 19.509282534761706 21.756160737503887 39.05782654585689 19.676730181877513 17 19.91413464136936 23.86363520479704 29.194017978696824 27.02821217513678 18 21.57158080980619 24.44358329806599 32.387148750006375 21.597687142121448 19 25.342620117172558 28.017907312322492 26.27694127604897 20.362531294455973 20 26.93582023342732 24.660796141157753 27.118870493215923 21.284513132199 21 22.952361042417692 28.814558359380175 27.876464019661327 20.356616578540798 22 23.192722859867125 25.37209171888783 26.412571830655562 25.022613590589483 23 21.59554560704871 28.975785356998994 25.868315988598876 23.56035304735342 24 21.222000703647236 25.291733164729933 33.201136033367156 20.285130098255667 25 21.21445434196236 26.19556294328501 30.500456350926214 22.089526363826415 26 19.938915261496728 29.83239938609328 28.582864660082297 21.645820692327696 27 21.51539100861203 28.32822594214796 28.25847308549314 21.89790996374687 28 20.065775720091167 27.015057031118545 32.33677168686678 20.582395561923505 29 19.815624028023514 24.850067050443347 31.605182514876017 23.729126406657112 30 21.2135365412169 27.169961401379762 29.713595178486752 21.902906878916585 31 23.989679840506625 26.019039266575227 27.054216529591425 22.937064363326723 32 24.699547728188207 26.023934203884338 27.480382009065828 21.79613605886162 33 23.537306050856362 26.35882949811596 28.1268196674502 21.977044783577483 34 19.961758302272575 26.971920396082012 28.992509726138454 24.073811575506955 35 20.11441915960045 24.827937854691744 30.710122832333102 24.347520153374703 36 23.974179205694444 26.65160793591711 27.104491614870412 22.26972124351803 37 20.858653586306414 28.292533690935702 29.492201243110124 21.356611479647768 38 21.001932480458493 28.709113251513095 27.4009412556534 22.888013012375012 39 20.490207575935266 28.169038501741273 27.81854059483686 23.5222133274866 40 22.711591313525833 25.43705161609415 27.739405775006247 24.111951295373775 41 18.10810673002891 24.681191713279045 29.29742352935178 27.913278027340265 42 21.654080899036817 26.156505422672737 27.022807348524637 25.166606329765806 43 20.96471056133713 25.98977162058117 29.54992071221338 23.495597105868317 44 21.198851729289572 27.950499946461623 27.97681023449809 22.873838089750713 45 19.91066739410874 28.660163878421997 26.357605763788683 25.071562963680584 46 21.936151661474295 28.2262480815415 26.69494852667486 23.14265173030935 47 21.557303909321288 25.660689064404117 28.54421505091245 24.23779197536215 48 21.74494317283718 23.89647207591232 29.78294012369915 24.57564462755136 49 21.017229159549462 23.902998658991134 29.797420979905265 25.282351201554143 50 19.733429872374707 26.69617226100214 29.650368904910746 23.92002896171241 51 19.133902029869315 27.354643306938065 27.551970467211568 25.95948419598105 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 632.0 1 883.5 2 1135.0 3 5878.0 4 10621.0 5 7696.0 6 4771.0 7 4819.5 8 4868.0 9 5241.0 10 5614.0 11 5913.0 12 6212.0 13 6125.5 14 6039.0 15 6075.5 16 6112.0 17 5823.5 18 5535.0 19 5569.5 20 5604.0 21 5619.5 22 5635.0 23 5807.5 24 5980.0 25 5843.5 26 6514.5 27 7322.0 28 8530.5 29 9739.0 30 11400.5 31 13062.0 32 14875.5 33 16689.0 34 19321.5 35 21954.0 36 23945.0 37 25936.0 38 30170.0 39 34404.0 40 43099.5 41 51795.0 42 61219.5 43 70644.0 44 80096.0 45 89548.0 46 92995.0 47 96442.0 48 90924.5 49 85407.0 50 76454.0 51 67501.0 52 62041.5 53 56582.0 54 52233.0 55 47884.0 56 44648.0 57 41412.0 58 39451.0 59 37490.0 60 35485.0 61 33480.0 62 29957.0 63 26434.0 64 24092.5 65 21751.0 66 18256.5 67 14762.0 68 12987.0 69 11212.0 70 9893.0 71 8574.0 72 7206.5 73 5839.0 74 5231.5 75 3676.5 76 2729.0 77 2018.5 78 1308.0 79 1107.0 80 906.0 81 656.0 82 406.0 83 297.5 84 189.0 85 122.5 86 56.0 87 47.0 88 38.0 89 24.0 90 10.0 91 7.0 92 4.0 93 4.5 94 5.0 95 3.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 980605.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.93328590516863 #Duplication Level Percentage of deduplicated Percentage of total 1 77.4633019144269 27.060476729350714 2 8.035870818628494 5.614387456083014 3 3.1434490276421645 3.2943301083284418 4 1.8371632657715031 2.5671259847067684 5 1.2966374754168242 2.264790382204599 6 0.9152265685831973 1.9183122832993953 7 0.699330138956992 1.7100929780400138 8 0.5573630334723318 1.5576417761008832 9 0.43996521707073766 1.383248764463549 >10 5.231610948835702 42.4442630083402 >50 0.3544879574228591 7.530560042931282 >100 0.0226518367870633 1.283863573091303 >500 0.0020592578896991482 0.4948213483045798 >1k 5.883593970568994E-4 0.21334353459611788 >5k 2.941796985284497E-4 0.662742030159135 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6449 0.6576552230510756 No Hit CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT 1059 0.10799455438224362 No Hit GAGAGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTT 1017 0.1037114842367722 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11921211904895447 0.0 2 0.0 0.0 0.0 0.3432574788013522 0.0 3 0.0 0.0 0.0 0.5279393843596555 0.0 4 0.0 0.0 0.0 0.8904706788156291 0.0 5 0.0 0.0 0.0 1.4980547723089317 0.0 6 0.0 0.0 0.0 2.730253262016816 0.0 7 0.0 0.0 0.0 3.306326196582722 0.0 8 0.0 0.0 0.0 4.958673471989231 0.0 9 0.0 0.0 0.0 5.734826969065016 0.0 10 0.0 0.0 0.0 6.885341192427124 0.0 11 0.0 0.0 0.0 7.789680860285232 0.0 12 0.0 0.0 0.0 8.515559272082031 0.0 13 0.0 0.0 0.0 8.93703376996854 0.0 14 0.0 0.0 0.0 9.122531498411695 0.0 15 0.0 0.0 0.0 9.309762850485159 0.0 16 0.0 0.0 0.0 9.676577215086605 0.0 17 0.0 0.0 0.0 10.087649971191254 0.0 18 0.0 0.0 0.0 10.634659215484318 0.0 19 0.0 0.0 0.0 10.918973490855135 0.0 20 0.0 0.0 0.0 11.215831043080547 0.0 21 0.0 0.0 0.0 11.618643592476074 0.0 22 0.0 0.0 0.0 12.028594592114052 0.0 23 0.0 0.0 0.0 12.555412220007037 0.0 24 0.0 0.0 0.0 12.950474451996472 0.0 25 0.0 0.0 0.0 13.294037864379643 0.0 26 0.0 0.0 0.0 13.603948582762682 0.0 27 0.0 0.0 0.0 13.903865470806288 0.0 28 0.0 0.0 0.0 14.23937263220155 0.0 29 0.0 0.0 0.0 14.609348310481794 0.0 30 0.0 0.0 0.0 15.020625022307657 0.0 31 0.0 0.0 0.0 15.395393660036406 0.0 32 0.0 0.0 0.0 15.756497264443889 0.0 33 0.0 0.0 0.0 16.12545316411807 0.0 34 0.0 0.0 0.0 16.465957240683046 0.0 35 0.0 0.0 0.0 16.85877595973914 0.0 36 0.0 0.0 0.0 17.220389453449656 0.0 37 0.0 0.0 0.0 17.59556600262083 0.0 38 0.0 0.0 0.0 17.987772854513285 0.0 39 0.0 0.0 0.0 18.357646554932924 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGTATCG 20 7.0327776E-4 45.000004 1 TCGTAAG 40 6.8139343E-9 45.000004 1 ACGTAAG 35 1.2116834E-7 45.000004 1 TAGTACG 35 1.2116834E-7 45.000004 1 ATTCGCG 30 2.165174E-6 44.999996 1 CGTTTTT 4940 0.0 42.26721 1 CGGTCTA 50 1.0804797E-9 40.5 31 ATAACGC 50 1.0804797E-9 40.5 11 AGTACGG 95 0.0 40.263157 2 CGGATAC 45 1.927765E-8 40.0 14 TGATTCG 45 1.927765E-8 40.0 15 GTACGGG 255 0.0 39.705883 3 CGAGGGA 495 0.0 39.545452 4 TAGGGCG 485 0.0 39.43299 5 CGACAGG 75 0.0 39.0 2 CGTTCGG 70 0.0 38.57143 45 CGTAAGG 140 0.0 38.57143 2 ATAGGGC 590 0.0 38.51695 4 GGTACCT 335 0.0 38.283585 8 CGGGTAT 130 0.0 38.07692 6 >>END_MODULE