##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546982_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1921705 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.642532542715973 31.0 31.0 33.0 30.0 34.0 2 32.035783848197305 33.0 31.0 34.0 30.0 34.0 3 32.094099250405236 33.0 31.0 34.0 30.0 34.0 4 35.80277253792856 37.0 35.0 37.0 35.0 37.0 5 35.770318545250184 37.0 35.0 37.0 35.0 37.0 6 35.819417652553334 37.0 35.0 37.0 35.0 37.0 7 36.15685237848681 37.0 35.0 37.0 35.0 37.0 8 36.0988606471857 37.0 35.0 37.0 35.0 37.0 9 37.87218641779045 39.0 38.0 39.0 35.0 39.0 10 37.30050137768284 39.0 37.0 39.0 34.0 39.0 11 37.15732955890732 39.0 37.0 39.0 33.0 39.0 12 36.915307500370766 39.0 35.0 39.0 33.0 39.0 13 36.86803541646611 39.0 37.0 39.0 33.0 39.0 14 38.021712489690145 40.0 37.0 41.0 33.0 41.0 15 38.07382975014375 40.0 37.0 41.0 33.0 41.0 16 38.1055448156715 40.0 37.0 41.0 33.0 41.0 17 38.026308408418565 40.0 36.0 41.0 33.0 41.0 18 37.90611462217146 40.0 36.0 41.0 33.0 41.0 19 37.835602759008275 40.0 36.0 41.0 33.0 41.0 20 37.692127043432784 40.0 35.0 41.0 33.0 41.0 21 37.62949516184846 40.0 35.0 41.0 33.0 41.0 22 37.536539687413 39.0 35.0 41.0 33.0 41.0 23 37.420943901379246 39.0 35.0 41.0 32.0 41.0 24 37.32795668429858 39.0 35.0 41.0 32.0 41.0 25 37.22292495466266 39.0 35.0 41.0 32.0 41.0 26 37.09263024241494 39.0 35.0 41.0 32.0 41.0 27 37.010122261221156 39.0 35.0 41.0 32.0 41.0 28 37.018768749625984 39.0 35.0 41.0 32.0 41.0 29 37.02594675041174 39.0 35.0 41.0 32.0 41.0 30 36.925522908042595 39.0 35.0 41.0 31.0 41.0 31 36.812957764068884 39.0 35.0 41.0 31.0 41.0 32 36.6709859213563 39.0 35.0 41.0 31.0 41.0 33 36.484244980369 39.0 35.0 41.0 30.0 41.0 34 36.26352639973357 39.0 35.0 41.0 30.0 41.0 35 36.12073497232926 39.0 35.0 41.0 29.0 41.0 36 36.0048618284284 39.0 35.0 41.0 29.0 41.0 37 35.92952508319435 39.0 35.0 41.0 28.0 41.0 38 35.81481236714272 39.0 35.0 41.0 28.0 41.0 39 35.709237890310945 39.0 35.0 41.0 27.0 41.0 40 35.60140552269989 39.0 35.0 41.0 27.0 41.0 41 35.52224352853325 38.0 35.0 41.0 26.0 41.0 42 35.425421175466575 38.0 35.0 41.0 26.0 41.0 43 35.31277433320931 38.0 35.0 41.0 26.0 41.0 44 35.17314103881709 38.0 34.0 40.0 25.0 41.0 45 35.07489078708751 38.0 34.0 40.0 24.0 41.0 46 35.017487075279504 38.0 34.0 40.0 24.0 41.0 47 34.959376178966075 38.0 34.0 40.0 24.0 41.0 48 34.86418987305544 38.0 34.0 40.0 24.0 41.0 49 34.765367733340966 37.0 34.0 40.0 24.0 41.0 50 34.66575983306491 37.0 34.0 40.0 24.0 41.0 51 34.31581382158031 37.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 0.0 11 1.0 12 0.0 13 6.0 14 10.0 15 48.0 16 126.0 17 328.0 18 715.0 19 1353.0 20 2469.0 21 3933.0 22 5912.0 23 8547.0 24 13233.0 25 20739.0 26 29193.0 27 33590.0 28 34846.0 29 36719.0 30 40361.0 31 47385.0 32 57228.0 33 73182.0 34 117352.0 35 169946.0 36 143123.0 37 185273.0 38 289609.0 39 606073.0 40 403.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.43582651863839 22.57843945870984 26.79989904798083 16.18583497467093 2 34.47063935411522 24.800216474432858 26.859169331401024 13.869974840050892 3 28.878990271659806 25.592897973414235 31.691544748023237 13.836567006902726 4 24.70670576389196 28.82445536645843 31.32816951613281 15.1406693535168 5 23.304357328518165 32.00553674991739 30.0568505571875 14.633255364376947 6 22.214127558600303 40.40953216024312 27.232691802331782 10.143648478824794 7 87.60772334983777 2.7907509217075464 8.206566564587177 1.394959163867503 8 87.41877655519448 2.392042483107449 8.139854972537409 2.049325989160667 9 81.72466637699335 4.444282551172006 10.805248464254399 3.0258026075802475 10 35.0769238774942 30.315943394017292 21.7478749339779 12.859257794510604 11 29.441615648603715 26.450886062116712 27.48767370642216 16.619824582857408 12 26.24185293788589 24.171764136535003 30.38140609510825 19.20497683047086 13 23.582703900962947 26.953304487421327 31.698413648296697 17.765577963319032 14 21.48758524331258 27.96131560255086 31.837456841710875 18.713642312425684 15 21.33766629113209 24.705560947179716 35.813457320452414 18.143315441235778 16 24.021845184354518 23.99041476189113 34.26988013248651 17.71785992126783 17 22.997130152650904 23.78309886272867 31.187096874910562 22.03267410970987 18 24.10474032174553 23.30820807564116 32.13380825881183 20.453243343801468 19 25.74838489778608 26.139599990633318 28.593514613325144 19.518500498255456 20 27.46977293601255 25.545648265472586 28.15421721856372 18.830361579951138 21 26.505420967318084 25.792408304084134 29.09218636575333 18.609984362844454 22 24.76300993128498 23.63822751150671 29.540954516952393 22.057808040255917 23 22.73392638308169 27.234096804660446 29.420540613673797 20.61143619858407 24 22.2532074381864 25.62604562094598 32.56889064658727 19.55185629428034 25 22.747560109382032 26.474458878964253 30.833712770690614 19.944268240963105 26 21.741526404937282 27.951480586250234 29.028597001100586 21.2783960077119 27 21.869329579722173 25.87238936257126 30.16201758334396 22.09626347436261 28 20.652025154745395 27.572390143128107 31.60901387049521 20.166570831631287 29 21.619915647823156 25.228429961934847 31.071262238480934 22.080392151761068 30 22.725496369109724 25.530609536843585 31.034055695333052 20.709838398713643 31 23.926721322991824 26.158177243645618 28.502241499085446 21.41285993427711 32 24.220574958175163 25.770084378195406 28.651223783046824 21.35811688058261 33 22.851998615812523 26.09016472351375 28.3813592616973 22.67647739897643 34 20.875316450755967 27.70393999078943 30.242310864570786 21.178432693883817 35 21.08315272115127 27.72340187489755 29.716787956528183 21.47665744742299 36 23.629381200548472 28.043586294462468 27.65840750791615 20.66862499707291 37 22.467340200499038 28.16681020239839 28.093750081308006 21.27209951579457 38 22.785755357872304 27.983431379946456 28.427724338543115 20.803088923638125 39 22.636304739801375 27.138400534941624 27.942894460908413 22.28240026434859 40 24.08871288777414 26.419039342667062 28.17123335787751 21.321014411681293 41 21.037308015538287 26.793342370447075 28.781732888242473 23.387616725772165 42 23.02694742429249 27.53601619395277 27.33322752451599 22.103808857238754 43 22.09834495929396 26.53169971457638 28.824091106595446 22.545864219534213 44 22.158447836686694 27.574627739429307 28.65361749071788 21.613306933166122 45 21.650149216451016 27.401135970401285 27.820711295438166 23.128003517709534 46 22.930418560601133 26.87993214359124 27.813374061055157 22.37627523475247 47 21.829833403149806 26.936808719340377 29.25266885396042 21.9806890235494 48 22.57646204802506 26.232174032955108 29.163997595884904 22.027366323134924 49 22.623191384733868 26.189607666109005 28.870300072071416 22.316900877085715 50 21.298586411545998 27.359662383144133 29.41767857189319 21.92407263341668 51 21.511158060160117 27.15812260466617 28.456865127582017 22.873854207591695 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 750.0 1 1411.0 2 2072.0 3 14899.0 4 27726.0 5 19466.0 6 11206.0 7 11000.5 8 10795.0 9 11168.0 10 11541.0 11 11696.5 12 11852.0 13 11726.5 14 11601.0 15 11403.0 16 11205.0 17 10893.0 18 10581.0 19 10223.0 20 9865.0 21 10455.5 22 11046.0 23 11363.5 24 11681.0 25 12934.5 26 16594.5 27 19001.0 28 21459.0 29 23917.0 30 28826.0 31 33735.0 32 38173.0 33 42611.0 34 48697.5 35 54784.0 36 60801.5 37 66819.0 38 72591.5 39 78364.0 40 86929.0 41 95494.0 42 105201.0 43 114908.0 44 120101.5 45 125295.0 46 134981.0 47 144667.0 48 147393.0 49 150119.0 50 149503.0 51 148887.0 52 139057.0 53 129227.0 54 119586.5 55 109946.0 56 101505.0 57 93064.0 58 86139.5 59 79215.0 60 73009.0 61 66803.0 62 61093.5 63 55384.0 64 48011.0 65 40638.0 66 34438.0 67 28238.0 68 24479.5 69 20721.0 70 17195.0 71 13669.0 72 12334.5 73 11000.0 74 10177.5 75 7415.5 76 5476.0 77 3961.0 78 2446.0 79 1683.5 80 921.0 81 682.5 82 444.0 83 368.0 84 292.0 85 185.5 86 79.0 87 61.0 88 43.0 89 31.0 90 19.0 91 15.0 92 11.0 93 7.0 94 3.0 95 2.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1921705.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.269859274787304 #Duplication Level Percentage of deduplicated Percentage of total 1 73.65571066164365 19.349251538658297 2 6.573338476093384 3.4536135346503607 3 2.7879259426670777 2.1971526654717857 4 1.8274500286648727 1.9202742033892894 5 1.3797216495142102 1.8122546785557854 6 1.0912596662367733 1.7200342718574835 7 0.9017780223828952 1.6582707221566257 8 0.8377952753094757 1.7607011186769292 9 0.7417838725401923 1.7537902149543854 >10 9.874943291600713 57.08516800824918 >50 0.30041580162308185 4.784501494628576 >100 0.02547065560497187 1.2910098406979016 >500 0.0022061014421752975 0.3695356151499987 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 2.0055467656139068E-4 0.8444420929033618 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16028 0.8340510119919551 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.203712328375063E-5 0.0 0.0 0.04792619054433433 0.0 2 5.203712328375063E-5 0.0 0.0 0.13560874327745415 0.0 3 5.203712328375063E-5 0.0 0.0 0.21709887833980762 0.0 4 5.203712328375063E-5 0.0 0.0 0.3696717238077645 0.0 5 5.203712328375063E-5 0.0 0.0 0.6055560036530061 0.0 6 5.203712328375063E-5 0.0 0.0 1.2122568240182545 0.0 7 5.203712328375063E-5 0.0 0.0 1.5461270070067987 0.0 8 5.203712328375063E-5 0.0 0.0 2.3212199583182644 0.0 9 5.203712328375063E-5 0.0 0.0 2.7589042022578907 0.0 10 5.203712328375063E-5 0.0 0.0 3.287861560437216 0.0 11 5.203712328375063E-5 0.0 0.0 3.671427196161742 0.0 12 5.203712328375063E-5 0.0 0.0 3.996034771205778 0.0 13 5.203712328375063E-5 0.0 0.0 4.192891208588207 0.0 14 5.203712328375063E-5 0.0 0.0 4.32209938570176 0.0 15 5.203712328375063E-5 0.0 0.0 4.433198643912567 0.0 16 5.203712328375063E-5 0.0 0.0 4.58780093718859 0.0 17 5.203712328375063E-5 0.0 0.0 4.756349179504658 0.0 18 5.203712328375063E-5 0.0 0.0 4.976934545104478 0.0 19 5.203712328375063E-5 0.0 0.0 5.117226629477469 0.0 20 5.203712328375063E-5 0.0 0.0 5.262097980699431 0.0 21 5.203712328375063E-5 0.0 0.0 5.428356589591014 0.0 22 5.203712328375063E-5 0.0 0.0 5.612099671905938 0.0 23 5.203712328375063E-5 0.0 0.0 5.816657603534361 0.0 24 5.203712328375063E-5 0.0 0.0 5.985413994343565 0.0 25 5.203712328375063E-5 0.0 0.0 6.139808139126453 0.0 26 5.203712328375063E-5 0.0 0.0 6.278903369663918 0.0 27 5.203712328375063E-5 0.0 0.0 6.427157133899324 0.0 28 5.203712328375063E-5 0.0 0.0 6.585922397038047 0.0 29 5.203712328375063E-5 0.0 0.0 6.7576969409977075 0.0 30 5.203712328375063E-5 0.0 0.0 6.9963391883769885 0.0 31 5.203712328375063E-5 0.0 0.0 7.185598205759989 0.0 32 5.203712328375063E-5 0.0 0.0 7.403841900812039 0.0 33 5.203712328375063E-5 0.0 0.0 7.59060313627742 0.0 34 5.203712328375063E-5 0.0 0.0 7.76971491462009 0.0 35 5.203712328375063E-5 0.0 0.0 7.967820242961329 0.0 36 5.203712328375063E-5 0.0 0.0 8.152760179111779 0.0 37 1.0407424656750126E-4 0.0 0.0 8.33926122896074 0.0 38 1.0407424656750126E-4 0.0 0.0 8.560419002916682 0.0 39 1.0407424656750126E-4 0.0 0.0 8.854428749469871 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 10460 0.0 42.031548 1 CGCATCG 70 0.0 41.785713 21 ATAACGC 95 0.0 40.263157 11 CACGACC 1980 0.0 39.886364 27 GCGAGAC 1985 0.0 39.559196 21 ACGACCA 2005 0.0 39.16459 28 GACACGA 1995 0.0 39.022556 25 ACACGAC 2005 0.0 38.94015 26 TCAAGCG 2045 0.0 38.72861 17 CGACCAA 2045 0.0 38.50856 29 AAACACG 2005 0.0 38.266834 40 AACACGT 1765 0.0 37.988667 41 AGGGCGA 2375 0.0 37.8 6 CGAGACA 2085 0.0 37.55396 22 AGACACG 2080 0.0 37.427883 24 GACCGAT 1630 0.0 37.1319 9 GTCAAGC 2130 0.0 37.07746 16 TAGGGCG 900 0.0 37.0 5 GGGCGAT 5165 0.0 36.984512 7 AGGGATT 2490 0.0 36.957832 6 >>END_MODULE