##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546977_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1923113 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.602066025241367 31.0 31.0 33.0 30.0 34.0 2 31.982302132012002 31.0 31.0 34.0 30.0 34.0 3 32.04993206327449 33.0 31.0 34.0 30.0 34.0 4 35.75078323530651 37.0 35.0 37.0 35.0 37.0 5 35.708281312642576 37.0 35.0 37.0 33.0 37.0 6 35.77075762058704 37.0 35.0 37.0 33.0 37.0 7 36.130352714583076 37.0 35.0 37.0 35.0 37.0 8 36.065387213335875 37.0 35.0 37.0 35.0 37.0 9 37.84774737625922 39.0 38.0 39.0 35.0 39.0 10 37.258773145415795 39.0 37.0 39.0 34.0 39.0 11 37.05060441066126 39.0 37.0 39.0 33.0 39.0 12 36.679584091002454 39.0 35.0 39.0 33.0 39.0 13 36.59741055257803 39.0 35.0 39.0 33.0 39.0 14 37.68241387791565 40.0 36.0 41.0 33.0 41.0 15 37.7711190138073 40.0 36.0 41.0 33.0 41.0 16 37.837071456539476 40.0 36.0 41.0 33.0 41.0 17 37.78207728823007 40.0 36.0 41.0 33.0 41.0 18 37.683976448601825 39.0 36.0 41.0 33.0 41.0 19 37.60970208198894 39.0 36.0 41.0 33.0 41.0 20 37.46967494889796 39.0 35.0 41.0 33.0 41.0 21 37.417672804458185 39.0 35.0 41.0 33.0 41.0 22 37.32837591966775 39.0 35.0 41.0 32.0 41.0 23 37.23815917213393 39.0 35.0 41.0 32.0 41.0 24 37.156303347749194 39.0 35.0 41.0 32.0 41.0 25 37.04780894310423 39.0 35.0 41.0 32.0 41.0 26 36.900705782759516 39.0 35.0 41.0 32.0 41.0 27 36.81341502033422 38.0 35.0 41.0 31.0 41.0 28 36.836329430459884 39.0 35.0 41.0 31.0 41.0 29 36.844987788029094 39.0 35.0 41.0 31.0 41.0 30 36.758802524864635 39.0 35.0 41.0 31.0 41.0 31 36.63647689969336 39.0 35.0 41.0 31.0 41.0 32 36.509557160707665 39.0 35.0 41.0 31.0 41.0 33 36.365738778740514 39.0 35.0 41.0 30.0 41.0 34 36.17144130376114 39.0 35.0 41.0 30.0 41.0 35 36.043340146938846 39.0 35.0 41.0 30.0 41.0 36 35.94440576294789 39.0 35.0 41.0 29.0 41.0 37 35.846607557642216 38.0 35.0 41.0 29.0 41.0 38 35.75049464072054 38.0 35.0 41.0 29.0 41.0 39 35.64940697712511 38.0 35.0 41.0 28.0 41.0 40 35.53192662105659 38.0 35.0 41.0 27.0 41.0 41 35.46518587311302 38.0 35.0 41.0 27.0 41.0 42 35.37593526745438 38.0 35.0 40.0 27.0 41.0 43 35.258414872136996 38.0 35.0 40.0 26.0 41.0 44 35.124799218766654 38.0 34.0 40.0 26.0 41.0 45 35.02519924726212 38.0 34.0 40.0 26.0 41.0 46 34.97426932270751 37.0 34.0 40.0 26.0 41.0 47 34.91501591430145 37.0 34.0 40.0 25.0 41.0 48 34.813198704392306 37.0 34.0 40.0 25.0 41.0 49 34.73325436414813 37.0 34.0 40.0 25.0 41.0 50 34.62217040808314 37.0 34.0 40.0 24.0 41.0 51 34.24227593490346 36.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 5.0 12 2.0 13 3.0 14 28.0 15 48.0 16 113.0 17 290.0 18 700.0 19 1364.0 20 2371.0 21 3925.0 22 6006.0 23 9251.0 24 14357.0 25 21202.0 26 27876.0 27 30668.0 28 32255.0 29 35200.0 30 41299.0 31 49376.0 32 60952.0 33 79169.0 34 132976.0 35 205668.0 36 142181.0 37 186448.0 38 279680.0 39 559288.0 40 410.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.109644103076626 24.449005336659884 27.688440564855004 13.752909995408485 2 33.47873993883875 25.45601844509397 27.440093223851118 13.625148392216163 3 29.68140717680136 24.72506815772136 31.61571888911364 13.977805776363637 4 24.98984719046671 28.821759303795464 30.85726111778143 15.331132387956403 5 22.74005739652324 32.597148477494564 30.304355490291 14.358438635691195 6 21.159807042019892 41.569320159553804 26.73457045945818 10.53630233896812 7 87.394812473318 3.366104851872979 7.555926250823535 1.6831564239854861 8 87.12779748251923 2.729116801768799 7.323750606438622 2.81933510927335 9 81.87641599843587 4.591825857346916 10.195760727528752 3.335997416688463 10 41.37962771818401 23.105922532893285 19.749957490797474 15.764492258125237 11 34.05572111467189 26.495478944814995 22.668142745642093 16.780657194871022 12 28.320852700803336 22.931725800823976 28.35070014086536 20.39672135750733 13 22.92241797543878 28.45189024253905 31.03582576790859 17.589866014113575 14 21.34897949314471 30.00333313747034 30.219753077432266 18.42793429195268 15 20.550222477826317 24.775767206607206 36.83740893020847 17.836601385358012 16 22.19723957978548 22.65935491050188 35.60700801252968 19.536397497182953 17 22.076341847826935 24.38457854530649 29.331401742903303 24.207677863963273 18 24.005297660615888 23.716599076601323 31.567567792428214 20.71053547035458 19 25.75402485449373 27.46552074683079 26.70737496964557 20.07307942902991 20 27.441497197512575 25.680186239706142 26.72604261944046 20.152273943340823 21 25.06867771160613 27.338331132907946 28.312740852981598 19.280250302504324 22 24.30964795100444 24.183082325375576 27.806998340711132 23.70027138290886 23 22.11627709864163 28.160643706324066 26.949846420881148 22.773232774153158 24 22.69357026862176 25.375367958097105 31.61847483741205 20.312586935869085 25 22.445326925666876 25.665054523577137 29.849208028857376 22.04041052189861 26 20.776678229516417 28.936001160618225 28.443414401545823 21.843906208319535 27 22.264474318461787 27.066116239659344 28.648238559044632 22.021170882834237 28 21.228653750455642 27.381542322266032 30.94513946918356 20.444664458094767 29 21.654941753292707 25.265234024209704 30.592430086011586 22.487394136486 30 23.173781259863567 26.425436258815783 29.945094230032243 20.455688251288407 31 25.46142634364179 26.075846817113714 27.223309290717708 21.23941754852679 32 25.35352836780782 26.017503911626616 27.98561498986279 20.643352730702773 33 25.23751854415211 25.619347381043134 27.35970273197675 21.78343134282801 34 21.407686391803292 27.801122450942824 29.28943853013318 21.501752627120716 35 21.681305258713344 27.405305876461757 29.2764387740086 21.636950090816295 36 24.87347337363951 26.956242300894434 26.59458908550876 21.575695239957298 37 22.010251087689596 29.156685020589013 27.508939932286868 21.32412395943452 38 22.835475606477623 28.588439680871584 26.180468854404293 22.395615858246497 39 22.357604571338243 27.42012559844377 26.435680066641947 23.786589763576035 40 23.861312361780094 25.56495640141791 26.880271726102418 23.69345951069958 41 20.414349026812257 25.10289306972601 27.681420696547733 26.801337206914 42 22.906454274917802 26.45403572228985 26.229035943285705 24.410474059506644 43 22.523169465340832 25.24916632563973 28.063613526610244 24.164050682409197 44 22.249758594528767 27.022593056154264 27.275048320093514 23.452600029223454 45 21.50284460663518 27.1316870095517 27.12841107100831 24.23705731280481 46 23.502935084937807 26.788285451764928 26.977405903865243 22.731373559432026 47 22.51094969458373 25.663494552842188 28.46816593720702 23.357389815367064 48 23.03712782348203 24.862969570690854 28.926433340110542 23.173469265716577 49 23.3807373773668 24.357487053542876 28.220234588399123 24.041540980691202 50 21.7194205436706 26.409888550490795 28.551468374453293 23.31922253138531 51 21.182894608897136 26.840752467483707 27.25222074833876 24.724132175280392 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1083.0 1 1575.0 2 2067.0 3 10576.5 4 19086.0 5 13415.0 6 7744.0 7 7986.5 8 8229.0 9 8867.5 10 9506.0 11 9798.5 12 10091.0 13 10190.5 14 10290.0 15 10275.0 16 10260.0 17 10341.5 18 10423.0 19 10363.5 20 10304.0 21 10074.0 22 9844.0 23 9709.0 24 9574.0 25 10092.5 26 12326.0 27 14041.0 28 16320.0 29 18599.0 30 21006.5 31 23414.0 32 27364.5 33 31315.0 34 36339.5 35 41364.0 36 46412.5 37 51461.0 38 58637.5 39 65814.0 40 80572.5 41 95331.0 42 110549.0 43 125767.0 44 142125.0 45 158483.0 46 169013.0 47 179543.0 48 173541.0 49 167539.0 50 156778.5 51 146018.0 52 135190.0 53 124362.0 54 115693.0 55 107024.0 56 100331.5 57 93639.0 58 87373.0 59 81107.0 60 75674.0 61 70241.0 62 62803.5 63 55366.0 64 49935.5 65 44505.0 66 38638.5 67 32772.0 68 27401.0 69 22030.0 70 18481.0 71 14932.0 72 13256.5 73 11581.0 74 9780.5 75 6363.5 76 4747.0 77 3582.0 78 2417.0 79 1822.0 80 1227.0 81 975.0 82 723.0 83 553.0 84 383.0 85 288.5 86 194.0 87 117.5 88 41.0 89 31.0 90 21.0 91 15.5 92 10.0 93 8.5 94 7.0 95 4.5 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1923113.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.220975116774376 #Duplication Level Percentage of deduplicated Percentage of total 1 76.25593532660659 20.75760918031914 2 7.673998604115496 4.1778745009757845 3 2.89934264373852 2.3676880188062728 4 1.6381777595676934 1.7837118412018156 5 1.1313242258356246 1.5397874300237784 6 0.8815331689809538 1.4397715474465085 7 0.7007647714234071 1.3352850283940054 8 0.6084536879255809 1.325016215898547 9 0.5036188099050221 1.2338095583487716 >10 6.590756364870804 42.04703162031103 >50 1.0507779321685289 18.078438017241524 >100 0.062224802779832965 2.548038354069246 >500 0.0015459510410151815 0.268590246683708 >1k 0.0013527071608882837 0.49057435185512355 >5k 0.0 0.0 >10k+ 1.932438801268977E-4 0.6067740884247105 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11535 0.5998087475878953 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.199902449830041E-5 0.0 0.0 0.09708217873832686 0.0 2 5.199902449830041E-5 0.0 0.0 0.29395048548889224 0.0 3 5.199902449830041E-5 0.0 0.0 0.45265150825770506 0.0 4 5.199902449830041E-5 0.0 0.0 0.7394261283658319 0.0 5 5.199902449830041E-5 0.0 0.0 1.223069055224524 0.0 6 5.199902449830041E-5 0.0 0.0 2.1931628562648164 0.0 7 5.199902449830041E-5 0.0 0.0 2.6392104884112375 0.0 8 5.199902449830041E-5 0.0 0.0 3.8264522157564325 0.0 9 5.199902449830041E-5 0.0 0.0 4.423245019923426 0.0 10 5.199902449830041E-5 0.0 0.0 5.309620391521455 0.0 11 5.199902449830041E-5 0.0 0.0 6.051022482818222 0.0 12 5.199902449830041E-5 0.0 0.0 6.62841965084735 0.0 13 5.199902449830041E-5 0.0 0.0 6.972809190099594 0.0 14 5.199902449830041E-5 0.0 0.0 7.137854093857199 0.0 15 1.0399804899660082E-4 0.0 0.0 7.305290952741727 0.0 16 1.0399804899660082E-4 0.0 0.0 7.602621374823008 0.0 17 1.0399804899660082E-4 0.0 0.0 7.933439168681195 0.0 18 1.0399804899660082E-4 0.0 0.0 8.352239311990507 0.0 19 1.0399804899660082E-4 0.0 0.0 8.587950890041302 0.0 20 1.0399804899660082E-4 0.0 0.0 8.835258250555219 0.0 21 1.0399804899660082E-4 0.0 0.0 9.141896498021698 0.0 22 1.0399804899660082E-4 0.0 0.0 9.454410635256483 0.0 23 1.0399804899660082E-4 0.0 0.0 9.824227697488395 0.0 24 1.0399804899660082E-4 0.0 0.0 10.116306218095348 0.0 25 1.0399804899660082E-4 0.0 0.0 10.374013383508926 0.0 26 1.0399804899660082E-4 0.0 0.0 10.619344781091907 0.0 27 1.0399804899660082E-4 0.0 0.0 10.867276129899803 0.0 28 1.0399804899660082E-4 0.0 0.0 11.12836323190577 0.0 29 1.0399804899660082E-4 0.0 0.0 11.404634049065239 0.0 30 1.0399804899660082E-4 0.0 0.0 11.755003476134787 0.0 31 1.0399804899660082E-4 0.0 0.0 12.04375405917385 0.0 32 1.0399804899660082E-4 0.0 0.0 12.352524266644759 0.0 33 1.0399804899660082E-4 0.0 0.0 12.630303055514679 0.0 34 1.0399804899660082E-4 0.0 0.0 12.918533648308758 0.0 35 1.0399804899660082E-4 0.0 0.0 13.22106397283987 0.0 36 1.0399804899660082E-4 0.0 0.0 13.512726501250837 0.0 37 1.0399804899660082E-4 0.0 0.0 13.812812871630529 0.0 38 1.0399804899660082E-4 0.0 0.0 14.130422913266147 0.0 39 1.0399804899660082E-4 0.0 0.0 14.52623948774721 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACCGCT 25 3.8917886E-5 45.0 19 CGTTTTT 8620 0.0 42.781322 1 TCGATTG 60 3.6379788E-12 41.250004 1 AGGGCGA 2140 0.0 41.109814 6 GCGATAT 315 0.0 40.0 9 TAGGGTA 1085 0.0 39.40092 5 GGCGATA 920 0.0 39.130432 8 AGGGTAC 1210 0.0 38.863636 6 GGGCGAT 4405 0.0 38.768444 7 CACGACC 1020 0.0 37.5 27 GACCGAT 1170 0.0 37.30769 9 TAAGGGA 1575 0.0 37.0 4 CGTTAGG 280 0.0 36.964283 2 ACACGAC 1035 0.0 36.956524 26 GTAGGGC 1110 0.0 36.48649 4 TATGGGC 960 0.0 36.32813 4 GTATCGC 25 0.0021074603 36.0 10 GGTTACG 50 4.8818038E-8 36.0 1 TCGAACG 25 0.0021074603 36.0 1 TCAAGCG 1065 0.0 35.915493 17 >>END_MODULE