##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546975_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1582859 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.669465821023856 31.0 31.0 33.0 30.0 34.0 2 32.031421623783295 33.0 31.0 34.0 30.0 34.0 3 31.87684563185982 33.0 31.0 34.0 30.0 34.0 4 35.72349463849907 37.0 35.0 37.0 33.0 37.0 5 35.73701447823211 37.0 35.0 37.0 33.0 37.0 6 35.817264835339095 37.0 35.0 37.0 35.0 37.0 7 36.1932819031891 37.0 35.0 37.0 35.0 37.0 8 36.147980963560244 37.0 35.0 37.0 35.0 37.0 9 37.94207633149889 39.0 38.0 39.0 35.0 39.0 10 37.42157324183645 39.0 37.0 39.0 34.0 39.0 11 37.212462386100086 39.0 37.0 39.0 34.0 39.0 12 37.045928285463205 39.0 37.0 39.0 33.0 39.0 13 37.026996719227675 39.0 37.0 39.0 33.0 39.0 14 38.264627487350424 40.0 37.0 41.0 33.0 41.0 15 38.30565893740378 40.0 37.0 41.0 33.0 41.0 16 38.32986134583055 40.0 37.0 41.0 33.0 41.0 17 38.294297217882324 40.0 37.0 41.0 33.0 41.0 18 38.024391307122116 39.0 37.0 41.0 33.0 41.0 19 37.789599705343306 39.0 37.0 41.0 34.0 41.0 20 37.47775323007293 39.0 35.0 41.0 33.0 41.0 21 37.43250409543743 39.0 35.0 41.0 33.0 41.0 22 37.363521956156546 39.0 35.0 41.0 33.0 41.0 23 37.25884933528508 39.0 35.0 41.0 33.0 41.0 24 37.16002625628688 39.0 35.0 41.0 33.0 41.0 25 37.07549124716731 38.0 35.0 41.0 33.0 41.0 26 36.953763411649426 38.0 35.0 41.0 33.0 41.0 27 36.87850528695228 38.0 35.0 41.0 32.0 41.0 28 36.84564765402351 38.0 35.0 41.0 32.0 41.0 29 36.8020272178381 38.0 35.0 41.0 32.0 41.0 30 36.677169602598845 38.0 35.0 41.0 31.0 41.0 31 36.445972130177104 38.0 35.0 41.0 31.0 41.0 32 36.00338564584717 38.0 35.0 41.0 30.0 41.0 33 35.47233455412011 38.0 35.0 41.0 25.0 41.0 34 34.90219406782285 38.0 35.0 41.0 21.0 41.0 35 34.51832348933165 38.0 34.0 41.0 18.0 41.0 36 34.29014650073064 38.0 34.0 41.0 16.0 41.0 37 34.17688688632405 38.0 34.0 41.0 15.0 41.0 38 34.055050386673734 38.0 34.0 41.0 15.0 41.0 39 33.95285998310652 38.0 34.0 41.0 15.0 41.0 40 33.86470178329213 38.0 33.0 41.0 14.0 41.0 41 33.809660241373365 38.0 33.0 41.0 12.0 41.0 42 33.706428683793064 38.0 33.0 40.0 12.0 41.0 43 33.60854630766227 38.0 33.0 40.0 10.0 41.0 44 33.453672121142816 38.0 33.0 40.0 10.0 41.0 45 33.391052519523214 38.0 33.0 40.0 10.0 41.0 46 33.32973246511534 38.0 33.0 40.0 10.0 41.0 47 33.302714897536674 38.0 33.0 40.0 10.0 41.0 48 33.18668055714375 37.0 33.0 40.0 10.0 41.0 49 33.10199076481228 37.0 33.0 40.0 10.0 41.0 50 33.00890477294566 37.0 33.0 40.0 10.0 41.0 51 32.65398370922489 37.0 32.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 1.0 13 5.0 14 9.0 15 23.0 16 87.0 17 274.0 18 629.0 19 1319.0 20 2423.0 21 4129.0 22 6668.0 23 10803.0 24 18415.0 25 33551.0 26 48912.0 27 49050.0 28 40927.0 29 35129.0 30 34496.0 31 37431.0 32 44301.0 33 56349.0 34 84702.0 35 134821.0 36 111191.0 37 137345.0 38 211828.0 39 477705.0 40 334.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.672699842500183 22.60984711841042 25.271992009395657 22.44546102969374 2 39.978861035632356 23.28002683751364 25.209131072319142 11.531981054534864 3 25.483571183535613 23.208068438186853 39.13955696622378 12.168803412053759 4 21.300949737152834 26.273913216527816 39.325486350963665 13.099650695355683 5 19.767016518843434 29.936399894115645 37.845190253838155 12.451393333202768 6 18.17167543034471 38.304106682907324 34.246006751075114 9.278211135672855 7 79.46538510379004 2.4580205817448046 16.709068843150273 1.3675254713148801 8 79.44049343624417 2.1296274652385336 16.38162337896174 2.0482557195555637 9 74.24483166220112 4.545003692685198 18.492740035593823 2.7174246095198624 10 32.4949347983617 28.74393739429728 26.26033019997359 12.500797607367428 11 23.53203917721035 25.684283944432195 35.31837011382568 15.465306764531775 12 21.83820542448822 22.048394708562167 38.3908484583908 17.722551408558818 13 19.579065475825704 25.951521898033874 39.142273569534616 15.327139056605802 14 18.068254974069074 28.080517595060584 37.374017521459585 16.477209909410757 15 16.71146956235521 25.343760878258898 42.43669208691362 15.508077472472278 16 18.192207897229 24.089258740039384 41.629924080413986 16.088609282317627 17 18.61574530643601 24.307092419476405 37.1269329738151 19.950229300272483 18 19.332044105002407 24.452462285017173 38.83586598679983 17.379627623180586 19 20.840517064375284 26.728596798577765 35.56918209391993 16.861704043127027 20 21.98850308208122 25.16598130345154 35.35305418865483 17.492461425812404 21 20.43972331079395 26.32641315493041 36.588034689128975 16.645828845146664 22 20.22372175917122 24.31265197974046 36.00516533689987 19.458460924188447 23 17.96957277938212 27.378433581260236 35.33782857474987 19.314165064607778 24 17.683887193995172 25.784166498721618 39.22813086952154 17.30381543776167 25 17.911323750251917 26.89127711312252 37.29776309829239 17.89963603833317 26 17.424862227147205 28.650119814841375 36.11559842032676 17.809419537684658 27 18.039951758179345 27.200780360095244 36.13455146668149 18.624716415043917 28 17.628797005924092 26.84762192968546 38.407148078255865 17.116432986134583 29 17.404582467547648 25.337695903425384 38.13536139352905 19.12236023549792 30 18.446873663415378 26.166259913232953 37.330109630737795 18.05675679261387 31 19.710536440706342 26.253128042358796 34.8602118066107 19.176123710324166 32 20.03810825853724 26.868280750212115 35.01423689665346 18.07937409459718 33 20.212413108179568 27.002215611118867 33.50235238893673 19.28301889176484 34 18.510555899167265 27.872349969264476 33.96499625045566 19.652097881112596 35 19.81755797578938 27.51167349713398 32.754970594348585 19.915797932728058 36 21.193359610679156 27.99074333216035 31.64438525478264 19.17151180237785 37 20.846518862387615 28.961518366449567 31.800874240851524 18.391088530311293 38 20.563802587596243 28.888865022089778 31.780784011715507 18.766548378598472 39 20.794018923985018 29.231851984289186 30.710631837706327 19.26349725401947 40 21.499261778844485 27.760147934844483 31.188374959487863 19.552215326823173 41 19.48265764670132 27.441357695157937 31.437481165410187 21.63850349273056 42 20.635066041890024 28.75088684462735 29.995091160994125 20.618955952488506 43 20.557674435941546 28.19575211689734 31.1706222727356 20.07595117442552 44 20.445851462448644 29.867726689490347 29.983087564969463 19.703334283091543 45 19.446899565912062 30.04569579476125 29.519116990205696 20.98828764912099 46 20.47819799489405 29.29875623792138 29.99831317887443 20.22473258831014 47 20.57384770216425 28.357927016872637 30.495577938401336 20.57264734256178 48 20.355319077694222 27.445148304428884 31.155902073400092 21.043630544476798 49 20.506185326677866 27.053894250846096 30.801480106566665 21.638440315909378 50 19.281313117592912 28.074199912942337 31.561434088570113 21.083052880894634 51 18.921837005064887 28.616446569151137 30.476814422510156 21.984902003273824 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 816.0 1 1155.0 2 1494.0 3 24574.5 4 47655.0 5 33410.0 6 19165.0 7 19185.0 8 19205.0 9 20601.0 10 21997.0 11 22591.5 12 23186.0 13 23427.0 14 23668.0 15 23358.5 16 23049.0 17 21894.0 18 20739.0 19 19976.5 20 19214.0 21 18360.0 22 17506.0 23 17311.0 24 17116.0 25 17666.5 26 19494.5 27 20772.0 28 22389.5 29 24007.0 30 27055.5 31 30104.0 32 33597.0 33 37090.0 34 41460.0 35 45830.0 36 50282.0 37 54734.0 38 60572.5 39 66411.0 40 74089.0 41 81767.0 42 89917.5 43 98068.0 44 106242.0 45 114416.0 46 122195.0 47 129974.0 48 133017.5 49 136061.0 50 129158.5 51 122256.0 52 108803.0 53 95350.0 54 84260.5 55 73171.0 56 64593.0 57 56015.0 58 49280.5 59 42546.0 60 36617.0 61 30688.0 62 25465.0 63 20242.0 64 16176.5 65 12111.0 66 9907.5 67 7704.0 68 5981.0 69 4258.0 70 3327.5 71 2397.0 72 1926.0 73 1455.0 74 1244.0 75 840.5 76 648.0 77 474.0 78 300.0 79 263.5 80 227.0 81 179.0 82 131.0 83 90.5 84 50.0 85 29.0 86 8.0 87 6.5 88 5.0 89 3.0 90 1.0 91 1.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1582859.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.38055850607592 #Duplication Level Percentage of deduplicated Percentage of total 1 74.9703051407583 28.774021826732376 2 8.396174255973799 6.4449971451722154 3 3.8338430379877324 4.414351110678001 4 2.361731325875372 3.6257826931356782 5 1.6638301938154096 3.1929366048953987 6 1.275288123705262 2.9367762266384156 7 0.9637226861473477 2.589175045751764 8 0.791899319562238 2.4314830532304152 9 0.6409613309948256 2.2140408477941276 >10 4.971977502947315 36.7348232931701 >50 0.11235268653157489 2.7300374599777233 >100 0.014762819638890765 0.9343855877162759 >500 0.0021563415160770747 0.5214616905791818 >1k 8.293621215681057E-4 0.4717410727861967 >5k 0.0 0.0 >10k+ 1.6587242431362112E-4 1.9839863417421097 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 31164 1.9688424553292492 No Hit CGTTCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTC 1808 0.11422369269783349 No Hit CGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTG 1628 0.10285186488499606 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.2635364236486004E-4 0.0 0.0 0.08137174568296987 0.0 2 1.2635364236486004E-4 0.0 0.0 0.2375448476459369 0.0 3 1.2635364236486004E-4 0.0 0.0 0.43364570059619967 0.0 4 1.2635364236486004E-4 0.0 0.0 0.6212176826868344 0.0 5 1.2635364236486004E-4 0.0 0.0 1.0247912164001973 0.0 6 1.2635364236486004E-4 0.0 0.0 1.9105934261990487 0.0 7 1.2635364236486004E-4 0.0 0.0 2.3899791453313277 0.0 8 1.2635364236486004E-4 0.0 0.0 3.4136963557714237 0.0 9 1.2635364236486004E-4 0.0 0.0 4.055320151700183 0.0 10 1.2635364236486004E-4 0.0 0.0 4.8317001072110655 0.0 11 1.2635364236486004E-4 0.0 0.0 5.402376332951956 0.0 12 1.2635364236486004E-4 0.0 0.0 5.90892808519268 0.0 13 1.2635364236486004E-4 0.0 0.0 6.274532349375402 0.0 14 1.2635364236486004E-4 0.0 0.0 6.506391283114921 0.0 15 1.2635364236486004E-4 0.0 0.0 6.687961467193224 0.0 16 1.2635364236486004E-4 0.0 0.0 6.930497283712573 0.0 17 1.8953046354729005E-4 0.0 0.0 7.19558722539405 0.0 18 1.8953046354729005E-4 0.0 0.0 7.555442398849171 0.0 19 1.8953046354729005E-4 0.0 0.0 7.76885370080342 0.0 20 1.8953046354729005E-4 0.0 0.0 7.998817329907465 0.0 21 1.8953046354729005E-4 0.0 0.0 8.248428950399246 0.0 22 1.8953046354729005E-4 0.0 0.0 8.519015275523593 0.0 23 1.8953046354729005E-4 0.0 0.0 8.828265815211589 0.0 24 1.8953046354729005E-4 0.0 0.0 9.08880702576793 0.0 25 1.8953046354729005E-4 0.0 0.0 9.318075709838968 0.0 26 1.8953046354729005E-4 0.0 0.0 9.542353425036595 0.0 27 1.8953046354729005E-4 0.0 0.0 9.778887443543614 0.0 28 1.8953046354729005E-4 0.0 0.0 10.014473809732895 0.0 29 1.8953046354729005E-4 0.0 0.0 10.27255112426312 0.0 30 1.8953046354729005E-4 0.0 0.0 10.624193310964527 0.0 31 1.8953046354729005E-4 0.0 0.0 10.888967368540092 0.0 32 1.8953046354729005E-4 0.0 0.0 11.148687280421061 0.0 33 1.8953046354729005E-4 0.0 0.0 11.41099744197051 0.0 34 1.8953046354729005E-4 0.0 0.0 11.689923107490939 0.0 35 1.8953046354729005E-4 0.0 0.0 11.969543718044374 0.0 36 1.8953046354729005E-4 0.0 0.0 12.256682370318519 0.0 37 1.8953046354729005E-4 0.0 0.0 12.53516579809067 0.0 38 1.8953046354729005E-4 0.0 0.0 12.820156438444611 0.0 39 1.8953046354729005E-4 0.0 0.0 13.113739126479365 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGACGT 20 7.0340926E-4 45.000004 17 CGACGTC 20 7.0340926E-4 45.000004 18 CAACGCG 25 3.8914746E-5 45.0 1 ATCCGCG 25 3.8914746E-5 45.0 1 TTACGCG 25 3.8914746E-5 45.0 1 CGTTTTT 21845 0.0 44.32021 1 AGGGCGA 1810 0.0 40.773483 6 TCCGCGG 45 1.9290383E-8 40.0 2 ACGGGTC 130 0.0 39.807693 5 TAGGGCG 680 0.0 39.705883 5 CGAGGGT 265 0.0 39.056602 4 GGCGATT 1040 0.0 38.94231 8 GTTTTTT 25145 0.0 38.69159 2 TGGGCGA 915 0.0 38.60656 6 CGGCGAT 35 6.249782E-6 38.571426 6 TCGTTAG 70 0.0 38.571426 1 CGACGGT 35 6.249782E-6 38.571426 28 TACGGGC 205 0.0 38.414635 4 TACGGGA 440 0.0 38.352272 4 ACGCGAG 65 9.094947E-12 38.076927 1 >>END_MODULE