SRR1546972_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546972_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	623934
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2867	0.45950372956113944	No Hit
GAGCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCT	870	0.13943782515458367	Illumina PCR Primer Index 5 (95% over 21bp)
GAGAGCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTT	858	0.13751454480762387	No Hit
AAGAGCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTT	707	0.11331326710838005	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	650	0.10417768546032112	No Hit
AAGCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCT	636	0.10193385838886805	Illumina PCR Primer Index 5 (95% over 21bp)
TAGAGCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTT	630	0.10097221821538815	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGT	25	3.8887476E-5	45.000004	28
CTAAGCG	25	3.8887476E-5	45.000004	1
CGGATTA	25	3.8887476E-5	45.000004	40
CGGTAGT	25	3.8887476E-5	45.000004	12
ATACCGA	25	3.8887476E-5	45.000004	37
CCCGACA	25	3.8887476E-5	45.000004	26
TACCCGT	20	7.030804E-4	45.0	36
CACGGTA	20	7.030804E-4	45.0	36
ATCACGA	20	7.030804E-4	45.0	35
CGTTCGG	35	1.2107375E-7	45.0	45
ACGATAT	20	7.030804E-4	45.0	38
TATCTCA	20	7.030804E-4	45.0	10
GTCACGA	20	7.030804E-4	45.0	11
CATACGA	70	0.0	45.0	18
TTAGTCG	20	7.030804E-4	45.0	1
ACGTAAG	20	7.030804E-4	45.0	1
TAGTCGT	20	7.030804E-4	45.0	15
AGTCGGC	40	6.8066583E-9	45.0	30
CTTACCG	20	7.030804E-4	45.0	33
ACGGGTA	30	2.1639007E-6	44.999996	5