##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546970_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1506349 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.670958058192358 31.0 31.0 33.0 30.0 34.0 2 32.05484651963124 33.0 31.0 34.0 30.0 34.0 3 32.01904140408365 33.0 31.0 34.0 30.0 34.0 4 35.784866588021764 37.0 35.0 37.0 35.0 37.0 5 35.770490769403374 37.0 35.0 37.0 35.0 37.0 6 35.837989071589654 37.0 35.0 37.0 35.0 37.0 7 36.17588951829888 37.0 35.0 37.0 35.0 37.0 8 36.12771276775833 37.0 35.0 37.0 35.0 37.0 9 37.89145742454106 39.0 38.0 39.0 35.0 39.0 10 37.45480960919415 39.0 37.0 39.0 35.0 39.0 11 37.2551334385325 39.0 37.0 39.0 34.0 39.0 12 37.07996885183978 39.0 37.0 39.0 33.0 39.0 13 37.03808878287834 39.0 37.0 39.0 33.0 39.0 14 38.21615774299316 40.0 37.0 41.0 33.0 41.0 15 38.27155459989684 40.0 37.0 41.0 33.0 41.0 16 38.30592777636524 40.0 37.0 41.0 33.0 41.0 17 38.25351761112464 40.0 37.0 41.0 33.0 41.0 18 38.07360312915533 40.0 37.0 41.0 33.0 41.0 19 37.93231648177149 40.0 37.0 41.0 33.0 41.0 20 37.70976778953616 40.0 35.0 41.0 33.0 41.0 21 37.65659618056639 39.0 35.0 41.0 33.0 41.0 22 37.584896328805605 39.0 35.0 41.0 33.0 41.0 23 37.488412711795206 39.0 35.0 41.0 33.0 41.0 24 37.398254322205545 39.0 35.0 41.0 33.0 41.0 25 37.28723556094902 39.0 35.0 41.0 33.0 41.0 26 37.16300339429973 39.0 35.0 41.0 32.0 41.0 27 37.08148310915996 39.0 35.0 41.0 32.0 41.0 28 37.07380494161711 39.0 35.0 41.0 32.0 41.0 29 37.036299024993546 39.0 35.0 41.0 32.0 41.0 30 36.93638658770312 39.0 35.0 41.0 32.0 41.0 31 36.773348008993935 39.0 35.0 41.0 31.0 41.0 32 36.531273961080736 39.0 35.0 41.0 31.0 41.0 33 36.216502948519896 39.0 35.0 41.0 30.0 41.0 34 35.86736075106101 39.0 35.0 41.0 27.0 41.0 35 35.614557449834 39.0 35.0 41.0 25.0 41.0 36 35.46996545953162 39.0 35.0 41.0 25.0 41.0 37 35.38382207576066 39.0 35.0 41.0 24.0 41.0 38 35.284829080113575 39.0 35.0 41.0 24.0 41.0 39 35.18036524072443 39.0 35.0 41.0 23.0 41.0 40 35.073468366228546 38.0 35.0 41.0 23.0 41.0 41 34.989400862615504 38.0 35.0 41.0 23.0 41.0 42 34.8971413663102 38.0 35.0 41.0 23.0 41.0 43 34.77754756699809 38.0 34.0 41.0 22.0 41.0 44 34.615368682821845 38.0 34.0 40.0 21.0 41.0 45 34.51191656116876 38.0 34.0 40.0 22.0 41.0 46 34.471177662015904 38.0 34.0 40.0 22.0 41.0 47 34.42481523206109 38.0 34.0 40.0 22.0 41.0 48 34.31163428926497 37.0 34.0 40.0 21.0 41.0 49 34.220156152392306 37.0 34.0 40.0 20.0 41.0 50 34.12687697206955 37.0 34.0 40.0 20.0 41.0 51 33.781276450543665 37.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 1.0 13 3.0 14 14.0 15 30.0 16 80.0 17 189.0 18 505.0 19 913.0 20 1771.0 21 2947.0 22 4532.0 23 7263.0 24 11643.0 25 19577.0 26 29060.0 27 33221.0 28 32020.0 29 30828.0 30 31921.0 31 36267.0 32 44084.0 33 55214.0 34 85986.0 35 127387.0 36 115995.0 37 146823.0 38 222916.0 39 464826.0 40 330.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.839400431108594 23.30535619567577 26.84112380331517 19.014119569900465 2 36.407897505823684 24.296295214455615 26.846169114859837 12.449638164860865 3 27.341804588445306 24.249028611563457 35.67685841727249 12.732308382718745 4 23.33151215289418 27.343663387435445 35.15128300281011 14.173541456860264 5 20.977675160271623 30.881688108134302 34.02000466027461 14.120632071319461 6 18.927419874146032 39.77239006365723 31.247539580800996 10.052650481395746 7 83.60061313812403 2.799085736439564 12.079006923362382 1.5212942020740214 8 83.44361100913534 2.3353817740775877 11.893923652486906 2.327083564300172 9 77.67144267364336 4.810837329197948 14.273850216649661 3.243869780509032 10 34.201370333169805 32.10869459866206 20.322050202177582 13.36788486599055 11 24.829106667843906 25.07991176015651 32.965136233369556 17.125845338630025 12 24.09448275266887 22.176467737556173 34.71333668359723 19.015712826177733 13 22.34309578988667 24.379277312229767 35.98110398055165 17.296522917331906 14 19.461094341351174 27.289426288330258 34.93267496443387 18.316804405884692 15 18.414988823971072 24.68153130516235 38.994283529248534 17.909196341618046 16 21.258021879391826 23.338017949359678 37.3781241929991 18.025835978249397 17 20.73257923628588 23.385284552251836 33.94804258508486 21.93409362637742 18 21.589817499132007 23.371409945503995 35.49131044664948 19.547462108714512 19 23.20119706654965 25.798072027133156 32.09906867532026 18.901662230996934 20 24.233494362860135 25.537906554191625 31.256899961429923 18.97169912151832 21 23.498671290650442 25.714824386646125 32.87325845471402 17.913245867989424 22 22.590183284218995 23.119144368270568 32.63413724176801 21.656535105742428 23 20.317535976058668 26.535351369436967 31.99052809143167 21.1565845630727 24 20.12521666625729 25.558618885796054 35.073213445224184 19.242951002722478 25 21.62712625029127 25.779815965622845 32.914417575209995 19.678640208875898 26 19.751863611951812 27.16375819946108 32.26888324020529 20.815494948381815 27 19.880319899306205 25.556361772736597 33.347716896947524 21.215601431009677 28 19.690788787990034 25.959123682493235 34.75210591967731 19.597981609839422 29 20.31036632281098 24.923507102271785 33.99789822942758 20.76822834548966 30 21.840091506018858 24.914545035712177 34.017017304754745 19.228346153514224 31 23.646246653332 25.10235011939464 31.554706113921803 19.696697113351554 32 23.66237837313929 25.162827472252445 31.55510442799112 19.619689726617136 33 23.13959115716212 25.21221841684762 31.161171813437655 20.487018612552603 34 22.24245510170618 25.777160538494066 31.830870535314194 20.14951382448556 35 22.04509048036013 26.136307057660606 31.461699778736534 20.35690268324273 36 24.495585020470024 26.052130017678504 29.51659940691035 19.935685554941116 37 22.682924076691393 27.19230404109539 30.223872422659028 19.900899459554193 38 22.613816585665074 27.37068235847071 29.660191628898747 20.355309426965466 39 21.985608912675612 26.82877606716637 29.607282243357947 21.578332776800064 40 22.910361410270795 25.92227963108151 30.555535271042768 20.61182368760493 41 20.634925903625255 25.89240607588281 31.061194982039353 22.411473038452577 42 22.02417899172104 27.116159668177826 29.598121019763678 21.261540320337453 43 21.638345429910334 26.12555257778908 30.700521592273773 21.53558040002682 44 21.98507782724986 27.179624376555502 30.190878740584022 20.64441905561062 45 20.800027085356714 27.307549578484135 29.825558353343084 22.066864982816067 46 22.62895252029908 27.05986461304784 29.36862573015948 20.9425571364936 47 21.751798553987157 26.706958347633915 30.48337403881836 21.057869059560566 48 21.56306407080962 26.591248110497634 30.42973441081715 21.415953407875598 49 22.006852329705797 25.885966665095538 30.34489351405285 21.76228749114581 50 21.1077910895815 26.323912984308418 31.20571660352282 21.362579322587262 51 20.951120888983894 26.85652528066205 30.198247550866363 21.99410627948769 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 717.0 1 1261.5 2 1806.0 3 21295.5 4 40785.0 5 27451.0 6 14117.0 7 13758.5 8 13400.0 9 14032.0 10 14664.0 11 14872.5 12 15081.0 13 15068.5 14 15056.0 15 14524.5 16 13993.0 17 13236.0 18 12479.0 19 11930.0 20 11381.0 21 11395.0 22 11409.0 23 11296.5 24 11184.0 25 12363.0 26 15397.5 27 17253.0 28 18841.5 29 20430.0 30 23286.0 31 26142.0 32 29344.0 33 32546.0 34 37429.0 35 42312.0 36 45926.5 37 49541.0 38 54350.5 39 59160.0 40 64786.5 41 70413.0 42 76440.0 43 82467.0 44 86833.5 45 91200.0 46 95487.0 47 99774.0 48 108071.0 49 116368.0 50 119093.0 51 121818.0 52 115716.0 53 109614.0 54 96711.0 55 83808.0 56 75548.5 57 67289.0 58 61356.0 59 55423.0 60 50868.0 61 46313.0 62 41427.0 63 36541.0 64 32161.0 65 27781.0 66 23570.5 67 19360.0 68 16495.5 69 13631.0 70 11836.5 71 10042.0 72 8595.0 73 7148.0 74 6214.5 75 3944.0 76 2607.0 77 1901.0 78 1195.0 79 969.0 80 743.0 81 529.0 82 315.0 83 219.0 84 123.0 85 78.5 86 34.0 87 32.0 88 30.0 89 22.5 90 15.0 91 12.0 92 9.0 93 8.5 94 8.0 95 4.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1506349.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.53518960338645 #Duplication Level Percentage of deduplicated Percentage of total 1 73.59019310239589 23.942708855362717 2 7.553537665758195 4.9151156026352805 3 3.4509529840612583 3.3683222894641593 4 2.188111477232854 2.847624871404677 5 1.666940206492993 2.711710783787884 6 1.2890642408850086 2.5163969692883508 7 1.0517103972851063 2.3952318028466677 8 0.8951804409874706 2.3299892301416363 9 0.7957045625392157 2.3299558929443753 >10 7.37904686058717 46.51178254960673 >50 0.11488615627519916 2.33316521583138 >100 0.02158792085275144 1.3387778305316436 >500 0.002878385670450397 0.670592468561598 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 2.055989764607426E-4 1.7886256375928746 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 26739 1.7750866499064957 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.9915703465797104E-4 0.0 0.0 0.07229400358084348 0.0 2 1.9915703465797104E-4 0.0 0.0 0.20566283112346476 0.0 3 1.9915703465797104E-4 0.0 0.0 0.35343735083967925 0.0 4 1.9915703465797104E-4 0.0 0.0 0.5148873202690745 0.0 5 1.9915703465797104E-4 0.0 0.0 0.8241781950929035 0.0 6 1.9915703465797104E-4 0.0 0.0 1.5680297195404251 0.0 7 1.9915703465797104E-4 0.0 0.0 1.9758369408417307 0.0 8 1.9915703465797104E-4 0.0 0.0 2.976866582710912 0.0 9 1.9915703465797104E-4 0.0 0.0 3.606733897655855 0.0 10 1.9915703465797104E-4 0.0 0.0 4.490194503398615 0.0 11 1.9915703465797104E-4 0.0 0.0 5.072994372486058 0.0 12 1.9915703465797104E-4 0.0 0.0 5.569227317175502 0.0 13 1.9915703465797104E-4 0.0 0.0 5.885820616603456 0.0 14 1.9915703465797104E-4 0.0 0.0 6.0785382404741535 0.0 15 1.9915703465797104E-4 0.0 0.0 6.229432887066676 0.0 16 1.9915703465797104E-4 0.0 0.0 6.44107042922988 0.0 17 1.9915703465797104E-4 0.0 0.0 6.677204286656014 0.0 18 1.9915703465797104E-4 0.0 0.0 7.006742793336737 0.0 19 1.9915703465797104E-4 0.0 0.0 7.188374008944806 0.0 20 1.9915703465797104E-4 0.0 0.0 7.392443583791008 0.0 21 1.9915703465797104E-4 0.0 0.0 7.6058071535879135 0.0 22 1.9915703465797104E-4 0.0 0.0 7.838223413033766 0.0 23 1.9915703465797104E-4 0.0 0.0 8.102239255312016 0.0 24 1.9915703465797104E-4 0.0 0.0 8.3158683678218 0.0 25 1.9915703465797104E-4 0.0 0.0 8.49650379825658 0.0 26 1.9915703465797104E-4 0.0 0.0 8.673488016389296 0.0 27 1.9915703465797104E-4 0.0 0.0 8.870919023413565 0.0 28 1.9915703465797104E-4 0.0 0.0 9.058657721417813 0.0 29 1.9915703465797104E-4 0.0 0.0 9.264652480932373 0.0 30 1.9915703465797104E-4 0.0 0.0 9.572748413548254 0.0 31 1.9915703465797104E-4 0.0 0.0 9.790692595142295 0.0 32 1.9915703465797104E-4 0.0 0.0 10.016005587018679 0.0 33 1.9915703465797104E-4 0.0 0.0 10.227709514860102 0.0 34 1.9915703465797104E-4 0.0 0.0 10.451296479102785 0.0 35 1.9915703465797104E-4 0.0 0.0 10.700707472172784 0.0 36 1.9915703465797104E-4 0.0 0.0 10.917523097237094 0.0 37 1.9915703465797104E-4 0.0 0.0 11.145823444633349 0.0 38 1.9915703465797104E-4 0.0 0.0 11.396694922624173 0.0 39 1.9915703465797104E-4 0.0 0.0 11.730349341354493 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 13625 0.0 43.877064 1 TATCGCG 50 1.0822987E-9 40.5 1 ACACGAC 615 0.0 39.878048 26 CACGACC 630 0.0 39.285713 27 GCGAGAC 635 0.0 38.97638 21 TACGCGG 70 0.0 38.57143 2 GGGCGAT 3140 0.0 38.479298 7 TTCGTAG 95 0.0 37.894737 1 AGGGCGA 1615 0.0 37.894737 6 TAGGGAT 2195 0.0 37.61959 5 CGCCGTT 30 1.1400903E-4 37.499996 26 CGCAACC 30 1.1400903E-4 37.499996 26 GTTTTTT 16335 0.0 37.300278 2 ACTAATC 725 0.0 37.24138 10 ACGACCA 665 0.0 37.218044 28 AGGGATT 2630 0.0 37.21483 6 ATAGGGA 1975 0.0 37.13924 4 TAGGGAC 1540 0.0 36.964287 5 AGGGATC 1595 0.0 36.959248 6 GCGCGAC 475 0.0 36.94737 9 >>END_MODULE