##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546960_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2162992 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.59315799596115 31.0 31.0 33.0 30.0 34.0 2 31.98383859024906 31.0 31.0 34.0 30.0 34.0 3 32.09426294688099 33.0 31.0 34.0 30.0 34.0 4 35.77203475556082 37.0 35.0 37.0 35.0 37.0 5 35.7155958043303 37.0 35.0 37.0 33.0 37.0 6 35.767234922736655 37.0 35.0 37.0 33.0 37.0 7 36.08406179958132 37.0 35.0 37.0 35.0 37.0 8 36.00721038265514 37.0 35.0 37.0 35.0 37.0 9 37.764100375775776 39.0 38.0 39.0 35.0 39.0 10 37.33030958967948 39.0 37.0 39.0 34.0 39.0 11 37.10404384297307 39.0 37.0 39.0 33.0 39.0 12 36.61555012686131 39.0 35.0 39.0 33.0 39.0 13 36.44181716807089 39.0 35.0 39.0 32.0 39.0 14 37.47705585596248 40.0 35.0 41.0 32.0 41.0 15 37.61640496127586 40.0 35.0 41.0 33.0 41.0 16 37.71372339795986 40.0 35.0 41.0 33.0 41.0 17 37.66950548129628 40.0 35.0 41.0 33.0 41.0 18 37.58730637931162 39.0 36.0 41.0 33.0 41.0 19 37.52047626620903 39.0 35.0 41.0 33.0 41.0 20 37.37225334166747 39.0 35.0 41.0 32.0 41.0 21 37.31147271927034 39.0 35.0 41.0 32.0 41.0 22 37.248489129871956 39.0 35.0 41.0 32.0 41.0 23 37.136344008669475 39.0 35.0 41.0 32.0 41.0 24 37.032424068142646 39.0 35.0 41.0 32.0 41.0 25 36.892078195388606 39.0 35.0 41.0 31.0 41.0 26 36.752434128281564 38.0 35.0 41.0 31.0 41.0 27 36.66236259773499 38.0 35.0 41.0 31.0 41.0 28 36.66217073387234 38.0 35.0 41.0 31.0 41.0 29 36.66926553588733 38.0 35.0 41.0 31.0 41.0 30 36.56835161664953 38.0 35.0 41.0 31.0 41.0 31 36.4345628647725 38.0 35.0 41.0 31.0 41.0 32 36.32136827135745 38.0 35.0 41.0 30.0 41.0 33 36.16263536804574 38.0 35.0 41.0 30.0 41.0 34 35.97117141441115 38.0 35.0 41.0 30.0 41.0 35 35.840262007441545 38.0 35.0 41.0 29.0 41.0 36 35.683889260801706 38.0 35.0 41.0 29.0 41.0 37 35.56349399350529 38.0 35.0 41.0 28.0 41.0 38 35.434389493812276 38.0 35.0 40.0 27.0 41.0 39 35.30152261312109 38.0 35.0 40.0 27.0 41.0 40 35.105802055671035 38.0 34.0 40.0 26.0 41.0 41 35.02927472685983 37.0 34.0 40.0 26.0 41.0 42 34.930291466635104 37.0 34.0 40.0 25.0 41.0 43 34.79244167338575 37.0 34.0 40.0 25.0 41.0 44 34.65313648871563 37.0 34.0 40.0 24.0 41.0 45 34.56056841634181 36.0 34.0 40.0 24.0 41.0 46 34.511512756404095 36.0 34.0 40.0 24.0 41.0 47 34.45566788966395 36.0 34.0 40.0 24.0 41.0 48 34.3423313632228 36.0 34.0 40.0 23.0 41.0 49 34.24940915176755 36.0 34.0 40.0 24.0 41.0 50 34.12960288341335 35.0 33.0 40.0 24.0 41.0 51 33.73860051262326 35.0 33.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 7.0 13 12.0 14 30.0 15 63.0 16 236.0 17 579.0 18 1236.0 19 2112.0 20 3585.0 21 5567.0 22 8425.0 23 12054.0 24 17580.0 25 24143.0 26 30106.0 27 34726.0 28 38394.0 29 43428.0 30 49659.0 31 58781.0 32 71561.0 33 92849.0 34 157803.0 35 245385.0 36 165812.0 37 217902.0 38 315332.0 39 565205.0 40 417.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.24570779734738 25.444893000066575 27.87777301071849 13.43162619186756 2 30.51953035425004 26.716095112695747 29.24916042222995 13.515214110824267 3 29.514441107502943 25.765698624867778 30.969370205715048 13.750490061914237 4 24.9634765177125 30.251938056174037 29.740470607380885 15.04411481873257 5 23.67812733472893 33.1202334544002 28.77333804285915 14.428301168011718 6 22.453111245903823 41.793450923535545 25.027878050404258 10.725559780156376 7 87.61040262747157 3.893819302151834 6.727717901869262 1.768060168507327 8 87.04456604555172 3.6100457144547926 6.315696035861436 3.029692204132054 9 81.1764907128644 6.170295590552346 9.172572066840747 3.480641629742505 10 42.29118739227884 30.689988682343717 13.783314963716926 13.235508961660514 11 36.790427333989214 24.678824517150318 22.23993431321059 16.290813835649878 12 32.22748858987921 20.3293400992699 26.70093093270803 20.742240378142867 13 24.68229193635483 27.70093463128851 28.611386449880538 19.005386982476125 14 21.37996811823622 29.272738872820614 29.72724818214769 19.62004482679548 15 19.66562983127076 23.07391798027917 37.145537292787026 20.114914895663045 16 23.135730506631553 20.49665463395149 34.79305517542367 21.574559683993282 17 23.205402516514162 22.107155273805915 27.169818473669803 27.517623736010123 18 24.02019979731779 21.76249380487769 31.476260661158246 22.741045736646274 19 27.366860348998056 25.120989814109347 25.530191512497503 21.981958324395098 20 27.995988889464225 25.025936295649732 24.865371670352918 22.11270314453313 21 26.15335609193192 25.416506394845655 27.33962955017864 21.090507963043784 22 25.808833319771875 22.14677631724944 25.93587955942509 26.108510803553596 23 23.434344648523897 26.04609725787243 25.625013869676817 24.894544223926857 24 23.187048310858295 23.984138637590892 31.152126313920718 21.676686737630096 25 23.967217631872888 23.944979916707968 28.232513111467817 23.855289339951327 26 21.605673992321748 27.457198177339535 26.365608379503946 24.57151945083477 27 22.885937627138706 25.474527876201115 26.850029958501924 24.789504538158255 28 21.04057712649885 26.252940371485423 29.88887614933389 22.817606352681842 29 22.536606700348404 23.56259292683468 29.148050478226455 24.752749894590455 30 23.440955861140495 24.72759954729375 28.945876822475537 22.885567769090223 31 26.767043058874002 24.84572296152737 25.58067713611516 22.80655684348347 32 28.430479631917272 23.680069089483457 25.634075391864602 22.255375886734672 33 27.087340128858546 24.21382048569759 24.807211492229282 23.891627893214583 34 23.41733117829377 25.96865822897172 26.98627641711111 23.627734175623395 35 24.00572910117097 25.768981115048046 27.232740574167636 22.99254920961335 36 28.4922459260136 25.138188213363712 24.69195447787139 21.677611382751298 37 24.991493264884937 27.167090770562258 26.329038664960386 21.512377299592416 38 26.323028471672572 26.297600730839505 24.952057150465652 22.427313647022274 39 25.109894072654914 26.26898296433829 24.722097908822594 23.899025054184204 40 26.998435500454924 23.60290745411911 25.74896254817401 23.649694497251954 41 22.57923284043584 23.214279109677705 27.30994844178804 26.896539608098415 42 25.44392212268931 23.873689777863255 25.57614637502127 25.106241724426166 43 23.774059266053687 22.92620592216707 28.412680213334124 24.887054598445115 44 23.63291218830213 24.79606951851879 27.083826477397977 24.487191815781102 45 22.49767914074578 25.726909762033333 26.311239246377237 25.46417185084365 46 24.567589709069658 24.851594458047003 26.79570705763128 23.78510877525206 47 23.691211063193947 24.249789180912366 28.04356188095009 24.015437874943597 48 24.324592971217644 23.585015571023842 28.35179233210294 23.738599125655576 49 24.84331888421224 22.447239749384188 28.056645609415103 24.652795756988468 50 23.430830997063325 24.755477597698004 27.63815122755886 24.175540177679807 51 22.448950342858414 25.452382625548314 26.581328086280486 25.51733894531279 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1426.0 1 2495.0 2 3564.0 3 11337.0 4 19110.0 5 13606.0 6 8102.0 7 8583.5 8 9065.0 9 10045.0 10 11025.0 11 11166.5 12 11308.0 13 11291.0 14 11274.0 15 11251.0 16 11228.0 17 10923.0 18 10618.0 19 10478.0 20 10338.0 21 9820.5 22 9303.0 23 9711.5 24 10120.0 25 10672.0 26 12470.5 27 13717.0 28 15402.5 29 17088.0 30 19437.0 31 21786.0 32 24952.0 33 28118.0 34 34423.5 35 40729.0 36 44440.5 37 48152.0 38 53413.0 39 58674.0 40 69796.5 41 80919.0 42 96890.0 43 112861.0 44 123248.0 45 133635.0 46 147982.0 47 162329.0 48 168655.0 49 174981.0 50 168560.5 51 162140.0 52 153436.5 53 144733.0 54 137756.5 55 130780.0 56 124204.5 57 117629.0 58 113431.5 59 109234.0 60 106095.0 61 102956.0 62 97684.0 63 92412.0 64 83012.5 65 73613.0 66 65666.5 67 57720.0 68 51433.0 69 45146.0 70 39637.0 71 34128.0 72 28105.5 73 22083.0 74 18330.0 75 13225.0 76 11873.0 77 8789.0 78 5705.0 79 4956.0 80 4207.0 81 3073.0 82 1939.0 83 1363.5 84 788.0 85 601.0 86 414.0 87 281.0 88 148.0 89 96.0 90 44.0 91 29.0 92 14.0 93 11.0 94 8.0 95 7.5 96 7.0 97 3.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2162992.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.675437701512678 #Duplication Level Percentage of deduplicated Percentage of total 1 79.67301355691102 17.269474418445995 2 7.061587680075608 3.061260076664966 3 2.282718291965607 1.484367543828118 4 1.2372798109721104 1.0727432584826142 5 0.8400963979980031 0.9104728569035457 6 0.5809169356888688 0.7554977309566634 7 0.48095395223357507 0.7297421200254611 8 0.3919830573174024 0.6797123471145463 9 0.32558712362653847 0.6351519073123566 >10 4.428492739588839 24.187368183038686 >50 2.2124750889896423 34.54883657883243 >100 0.479510033271023 12.915178830114199 >500 0.0032311988171028027 0.5043177621272297 >1k 0.0019387192902616816 0.7134968727956852 >5k 0.0 0.0 >10k+ 2.1541325447352018E-4 0.5323795133575292 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11402 0.5271401835975352 No Hit GAGAGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTT 2592 0.11983400770784172 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.623225606012413E-5 0.0 0.0 0.06486385525235415 0.0 2 4.623225606012413E-5 0.0 0.0 0.18654715320260085 0.0 3 4.623225606012413E-5 0.0 0.0 0.2874259359257917 0.0 4 4.623225606012413E-5 0.0 0.0 0.6100808509693979 0.0 5 4.623225606012413E-5 0.0 0.0 1.0009745759577475 0.0 6 4.623225606012413E-5 0.0 0.0 1.9244638907587268 0.0 7 4.623225606012413E-5 0.0 0.0 2.3079604547774566 0.0 8 4.623225606012413E-5 0.0 0.0 3.364413738007353 0.0 9 4.623225606012413E-5 0.0 0.0 3.8855437283170717 0.0 10 4.623225606012413E-5 0.0 0.0 4.66710001701347 0.0 11 4.623225606012413E-5 0.0 0.0 5.303394557168959 0.0 12 4.623225606012413E-5 0.0 0.0 5.819531463824184 0.0 13 4.623225606012413E-5 0.0 0.0 6.0893429101910685 0.0 14 4.623225606012413E-5 0.0 0.0 6.20908445338679 0.0 15 4.623225606012413E-5 0.0 0.0 6.322214783965914 0.0 16 4.623225606012413E-5 0.0 0.0 6.527624697641046 0.0 17 4.623225606012413E-5 0.0 0.0 6.731508946866192 0.0 18 4.623225606012413E-5 0.0 0.0 7.022818392301035 0.0 19 9.246451212024825E-5 0.0 0.0 7.16623085059954 0.0 20 9.246451212024825E-5 0.0 0.0 7.339047023752284 0.0 21 9.246451212024825E-5 0.0 0.0 7.54237648590471 0.0 22 9.246451212024825E-5 0.0 0.0 7.757495173352467 0.0 23 9.246451212024825E-5 0.0 0.0 7.990644440663673 0.0 24 9.246451212024825E-5 0.0 0.0 8.18334048392227 0.0 25 9.246451212024825E-5 0.0 0.0 8.336369251481281 0.0 26 9.246451212024825E-5 0.0 0.0 8.48102998069341 0.0 27 9.246451212024825E-5 0.0 0.0 8.634659767581203 0.0 28 9.246451212024825E-5 0.0 0.0 8.784174883679643 0.0 29 9.246451212024825E-5 0.0 0.0 8.95403219244454 0.0 30 9.246451212024825E-5 0.0 0.0 9.18500854372092 0.0 31 9.246451212024825E-5 0.0 0.0 9.367163632597808 0.0 32 9.246451212024825E-5 0.0 0.0 9.537760657459668 0.0 33 9.246451212024825E-5 0.0 0.0 9.716217165851747 0.0 34 9.246451212024825E-5 0.0 0.0 9.899019506313477 0.0 35 9.246451212024825E-5 0.0 0.0 10.118160400038466 0.0 36 9.246451212024825E-5 0.0 0.0 10.29546110202904 0.0 37 9.246451212024825E-5 0.0 0.0 10.488896861384601 0.0 38 9.246451212024825E-5 0.0 0.0 10.7197345158928 0.0 39 9.246451212024825E-5 0.0 0.0 11.09199664168892 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACTT 20 7.034668E-4 45.0 16 TCGATAG 155 0.0 42.09677 1 CGTTTTT 7290 0.0 41.51235 1 GCGTAAG 155 0.0 39.193546 1 ACGGGAT 580 0.0 39.181034 5 TTACGGG 625 0.0 38.52 3 GGGCGAT 4345 0.0 38.268124 7 GTAGTAG 355 0.0 38.028168 1 TAGGGTA 860 0.0 37.936043 5 GGACTAA 1365 0.0 37.747253 8 CGGTCTA 300 0.0 37.5 31 TCCGTAC 30 1.14025475E-4 37.499996 24 AGGGCGA 2000 0.0 37.35 6 CACGACC 775 0.0 37.16129 27 GGTACCT 1800 0.0 37.0 8 TAAGGGA 2650 0.0 36.679245 4 GGCGATT 1180 0.0 36.61017 8 TAGCATA 1685 0.0 36.58754 30 ATAGGGA 2615 0.0 36.56788 4 CATACGA 210 0.0 36.42857 18 >>END_MODULE