SRR1546957_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546957_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1043337
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5739	0.5500619646384629	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3168	0.3036411054146455	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGGT	35	1.2117926E-7	45.000004	4
CGAGGTA	55	1.8189894E-12	45.000004	6
TAGACGT	25	3.890557E-5	45.0	37
GTTACGA	50	2.1827873E-11	45.0	2
CTAACCG	25	3.890557E-5	45.0	36
GATTACG	25	3.890557E-5	45.0	1
ACGCAGA	65	0.0	44.999996	2
CGTTTTT	4965	0.0	43.277943	1
CGACGGT	220	0.0	42.954548	28
ACGACGG	205	0.0	42.80488	27
ACGGGTA	65	0.0	41.53846	5
CGGTCTA	215	0.0	40.813953	31
CTATGCG	45	1.9279469E-8	40.0	1
TCGTTGA	45	1.9279469E-8	40.0	2
ACGGTCT	220	0.0	39.886368	30
GTTTTTA	3770	0.0	39.628647	2
ATAGAGT	330	0.0	39.545452	4
GAGGGGA	8125	0.0	39.406155	7
AGGGGAA	8255	0.0	39.03089	8
ACGTTAG	35	6.247734E-6	38.57143	1