SRR1546956_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546956_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	867248
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3728	0.42986550559932113	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2123	0.24479733594081507	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1126	0.12983598693799236	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATCG	30	2.164883E-6	45.000004	21
ACGGGTA	60	0.0	45.000004	5
TCTTGCG	20	7.0323277E-4	45.0	1
CGAACTA	20	7.0323277E-4	45.0	6
CGTCTAC	20	7.0323277E-4	45.0	39
CTACGCG	20	7.0323277E-4	45.0	1
ATACCGA	25	3.8900114E-5	45.0	2
CGTTTTT	3610	0.0	44.127422	1
CGACGGT	135	0.0	43.333332	28
CACGACG	135	0.0	43.333332	26
TATGCGA	70	0.0	41.785713	2
GAGCGAT	620	0.0	41.370968	7
CTTGCGA	60	3.6379788E-12	41.250004	2
CGGAGAT	60	3.6379788E-12	41.250004	5
CGCGTAA	55	6.002665E-11	40.909092	31
GAGGGGA	6265	0.0	40.331203	7
AGCGATC	45	1.9274012E-8	40.0	8
TGGTACG	45	1.9274012E-8	40.0	1
AGGGGAA	6405	0.0	39.41452	8
TGCACGA	40	3.4569166E-7	39.375	2