##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546956_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 867248 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.69931668911315 31.0 31.0 33.0 30.0 34.0 2 32.07088053244286 33.0 31.0 34.0 30.0 34.0 3 32.11734705643599 33.0 31.0 34.0 30.0 34.0 4 35.87895042709813 37.0 35.0 37.0 35.0 37.0 5 35.87145891371326 37.0 35.0 37.0 35.0 37.0 6 35.91820332822906 37.0 35.0 37.0 35.0 37.0 7 36.10741679427338 37.0 35.0 37.0 35.0 37.0 8 13.289874407320628 0.0 0.0 35.0 0.0 37.0 9 24.98029514049038 18.0 17.0 39.0 17.0 39.0 10 32.47016193753113 32.0 32.0 37.0 27.0 39.0 11 35.48151393834289 37.0 34.0 37.0 32.0 39.0 12 36.628068326476395 37.0 35.0 39.0 33.0 39.0 13 36.91684500857886 39.0 37.0 39.0 33.0 39.0 14 38.09695842481044 40.0 37.0 41.0 33.0 41.0 15 38.38413925428482 40.0 37.0 41.0 34.0 41.0 16 38.464974263417155 40.0 38.0 41.0 34.0 41.0 17 38.45006733944616 40.0 37.0 41.0 34.0 41.0 18 38.39950856041178 40.0 37.0 41.0 34.0 41.0 19 38.37673537442577 40.0 37.0 41.0 34.0 41.0 20 38.34309217202 40.0 37.0 41.0 34.0 41.0 21 38.28228257661015 40.0 37.0 41.0 34.0 41.0 22 38.23218848587717 40.0 37.0 41.0 34.0 41.0 23 38.11677397930004 40.0 37.0 41.0 34.0 41.0 24 38.01564027821338 40.0 36.0 41.0 34.0 41.0 25 37.909871224839954 40.0 36.0 41.0 33.0 41.0 26 37.84815070199066 40.0 36.0 41.0 33.0 41.0 27 37.802159243953284 40.0 36.0 41.0 33.0 41.0 28 37.75091553973027 40.0 36.0 41.0 33.0 41.0 29 37.764642870320834 40.0 36.0 41.0 33.0 41.0 30 37.68510506798517 40.0 36.0 41.0 33.0 41.0 31 37.60181747320259 40.0 36.0 41.0 33.0 41.0 32 37.45315411508588 40.0 36.0 41.0 33.0 41.0 33 37.30518029444865 40.0 36.0 41.0 33.0 41.0 34 37.137137243326016 40.0 35.0 41.0 32.0 41.0 35 36.99479041750457 40.0 35.0 41.0 31.0 41.0 36 36.86957133369002 40.0 35.0 41.0 31.0 41.0 37 36.802630850690925 40.0 35.0 41.0 31.0 41.0 38 36.7323914266738 40.0 35.0 41.0 31.0 41.0 39 36.654421803221226 40.0 35.0 41.0 31.0 41.0 40 36.55590211796395 40.0 35.0 41.0 30.0 41.0 41 36.51207151818165 40.0 35.0 41.0 30.0 41.0 42 36.459538678670924 39.0 35.0 41.0 30.0 41.0 43 36.37434620777448 39.0 35.0 41.0 30.0 41.0 44 36.145901748980684 39.0 35.0 41.0 30.0 41.0 45 36.088882303562535 39.0 35.0 40.0 29.0 41.0 46 36.06623595557441 39.0 35.0 40.0 29.0 41.0 47 36.030507997712306 39.0 35.0 40.0 29.0 41.0 48 35.958071970186154 39.0 35.0 40.0 29.0 41.0 49 35.86870883530432 39.0 35.0 40.0 29.0 41.0 50 35.759360644244786 38.0 35.0 40.0 28.0 41.0 51 35.388715799863476 38.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 3.0 14 2.0 15 12.0 16 32.0 17 92.0 18 217.0 19 416.0 20 768.0 21 1370.0 22 2262.0 23 3462.0 24 5495.0 25 8083.0 26 10408.0 27 11341.0 28 11658.0 29 12953.0 30 15792.0 31 20445.0 32 27277.0 33 37740.0 34 58183.0 35 88287.0 36 92163.0 37 159445.0 38 208796.0 39 90520.0 40 25.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.75920152021106 23.415793406269025 28.308857443314945 14.516147630204971 2 32.75902625315942 24.622368688079995 29.76438112281608 12.854223935944505 3 30.365823847388523 24.363503865099716 32.22769034924266 13.042981938269099 4 26.389221998782354 26.6961699536926 32.011604523734846 14.903003523790195 5 23.346147814696604 32.13313838717414 30.320392782687307 14.200321015441949 6 21.252974927587033 41.27319982288803 27.084986070881683 10.388839178643249 7 86.8655793959744 4.1130103499806285 7.3884286847591465 1.6329815692858327 8 33.01420124347361 63.510668228695835 2.6192046565688245 0.8559258712617384 9 84.0464319318119 4.431834953784846 8.743750345921812 2.7779827684814493 10 42.57559544674649 23.422596535247127 21.99440067892921 12.007407339077172 11 39.15857978340682 24.09195524232976 21.4332001918713 15.31626478239212 12 33.73049000977806 23.275695072228476 26.2740300352379 16.71978488275557 13 23.666817334833866 31.705117797907867 26.89611276128628 17.731952105971992 14 19.389148202129032 34.177420991458035 29.48464568381824 16.94878512259469 15 18.544522443407192 25.580802723096507 39.18244838846559 16.692226445030716 16 20.486527498477944 22.077421913916204 38.50409571425936 18.931954873346495 17 21.270501632750953 22.063354426876742 29.193264210468055 27.47287972990425 18 23.647791635149346 24.382529564784235 31.812122945224434 20.157555854841984 19 26.96979410733723 26.114329465158754 26.93877645148792 19.97709997601609 20 28.3689325314097 25.53929210560301 26.341830710477282 19.74994465251001 21 25.011530727081528 26.366967695515008 29.51162758518901 19.109873992214453 22 24.299277715255613 22.892759625850967 29.14967806209988 23.658284596793536 23 21.574912827703262 27.64537940704389 28.2027747541649 22.576933011087945 24 21.322620519159454 25.700261055661127 33.9551085733262 19.02200985185322 25 21.074825194177443 26.307584451045145 31.809586185266497 20.808004169510912 26 19.76839381584045 31.226707931295316 27.401158607457155 21.60373964540708 27 19.958304890873197 29.96132594136856 30.30736306108518 19.773006106673062 28 18.365334944560264 27.718138294928323 35.50368522037526 18.412841540136153 29 19.12359555744147 26.564719664963192 34.24199306311459 20.069691714480747 30 21.359749460361975 27.286081951183515 32.1940206261646 19.160147962289912 31 27.085447299964947 26.02750309023486 26.713350737044074 20.17369887275612 32 26.20092522554102 27.472649115362618 27.11219858679409 19.214227072302272 33 25.046353522867737 26.9876667343136 27.477953249820118 20.488026492998543 34 20.681512093426562 28.157574304005312 29.23777281700275 21.923140785565376 35 21.406448905042154 27.101129088795822 30.265045292695973 21.227376713466047 36 26.58582089552239 26.454716528605427 27.069188974779994 19.89027360109219 37 21.654359537294983 29.774528162647822 27.81119126247625 20.759921037580945 38 21.866294301053447 31.390213641311366 24.901642897994574 21.84184915964061 39 21.427319521059722 28.843767872626973 27.233501835691754 22.49541077062155 40 23.05107650868033 26.041685884545135 27.585650240761584 23.321587366012952 41 19.87228566684501 25.755608545652454 28.391763371031125 25.980342416471412 42 22.540957142593584 27.21839658321495 26.080429127539066 24.1602171466524 43 22.769150231537 27.0382866262015 26.57429016844086 23.618272973820638 44 20.98154161208789 29.107360293710684 27.719867903990554 22.191230190210874 45 20.606101138313377 31.831609873992218 25.46272807778167 22.099560909912736 46 23.305674962640445 29.405083666955704 26.975098241794736 20.314143128609118 47 22.62847536114237 28.37366012951313 27.119924173938713 21.87794033540579 48 22.714379277899745 26.882391196059256 28.762706861243842 21.640522664797153 49 21.800453849417927 26.185012822168513 29.591766138405625 22.422767190007935 50 20.837638138110435 29.548641219120714 28.354865044370236 21.25885559839861 51 20.70226740217331 31.145877534453813 26.358550264745496 21.793304798627382 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 561.0 1 931.0 2 1301.0 3 5716.5 4 10132.0 5 7141.5 6 4151.0 7 4230.5 8 4310.0 9 4421.0 10 4532.0 11 4497.0 12 4462.0 13 4360.0 14 4258.0 15 4032.5 16 3807.0 17 3561.5 18 3316.0 19 3401.0 20 3486.0 21 3749.5 22 4013.0 23 4324.0 24 4635.0 25 5218.5 26 6892.5 27 7983.0 28 9974.5 29 11966.0 30 13897.0 31 15828.0 32 18087.0 33 20346.0 34 23398.5 35 26451.0 36 29472.5 37 32494.0 38 38572.0 39 44650.0 40 53462.5 41 62275.0 42 67050.0 43 71825.0 44 73097.0 45 74369.0 46 73795.0 47 73221.0 48 70569.5 49 67918.0 50 65291.0 51 62664.0 52 57234.0 53 51804.0 54 47618.0 55 43432.0 56 40069.0 57 36706.0 58 33248.0 59 29790.0 60 26991.5 61 24193.0 62 20793.0 63 17393.0 64 14452.5 65 11512.0 66 9481.5 67 7451.0 68 6444.0 69 5437.0 70 4515.5 71 3594.0 72 2992.0 73 2390.0 74 1916.5 75 1078.5 76 714.0 77 526.5 78 339.0 79 252.0 80 165.0 81 128.0 82 91.0 83 57.5 84 24.0 85 15.5 86 7.0 87 5.0 88 3.0 89 2.0 90 1.0 91 1.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 867248.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.118572464263803 #Duplication Level Percentage of deduplicated Percentage of total 1 68.46471972917455 19.251301829503063 2 6.5803298649959805 3.7005896429529748 3 3.571318630360233 3.012611451022787 4 2.6096455530896954 2.935180303623856 5 2.147977932559272 3.019903657415372 6 1.7487568548618764 2.9503527807487036 7 1.545442334570613 3.0418942591775364 8 1.4304344170768022 3.2177419049560814 9 1.2440749458598963 3.148345036452291 >10 10.566450591681225 52.727568096072396 >50 0.07061456497240824 1.25405098629138 >100 0.018995728911833567 0.9303199636326577 >500 0.0 0.0 >1k 0.0012388518855543436 0.8101400881508976 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3728 0.42986550559932113 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2123 0.24479733594081507 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1126 0.12983598693799236 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.009109274394406213 0.0 2 0.0 0.0 0.0 0.026174750475065955 0.0 3 0.0 0.0 0.0 0.0413953102226814 0.0 4 0.0 0.0 0.0 0.06134346807372286 0.0 5 0.0 0.0 0.0 0.11104090179510359 0.0 6 0.0 0.0 0.0 0.16961699536926 0.0 7 0.0 0.0 0.0 0.2054775565928085 0.0 8 0.0 0.0 0.0 0.28273342803903845 0.0 9 0.0 0.0 0.0 0.37163533383761044 0.0 10 0.0 0.0 0.0 0.5531289781008432 0.0 11 0.0 0.0 0.0 0.7247061970739627 0.0 12 1.1530727081526852E-4 0.0 0.0 0.8800250908621294 0.0 13 1.1530727081526852E-4 0.0 0.0 0.9441359334354187 0.0 14 1.1530727081526852E-4 0.0 0.0 0.972155600243529 0.0 15 1.1530727081526852E-4 0.0 0.0 1.0143580613619172 0.0 16 1.1530727081526852E-4 0.0 0.0 1.104413039868642 0.0 17 1.1530727081526852E-4 0.0 0.0 1.2068058963526005 0.0 18 1.1530727081526852E-4 0.0 0.0 1.3383714923528218 0.0 19 1.1530727081526852E-4 0.0027673744995664446 0.0 1.4095160784458425 0.0 20 1.1530727081526852E-4 0.0027673744995664446 0.0 1.4800841281847867 0.0 21 1.1530727081526852E-4 0.0027673744995664446 0.0 1.5765963138571666 0.0 22 1.1530727081526852E-4 0.0027673744995664446 0.0 1.672070734092209 0.0 23 1.1530727081526852E-4 0.0027673744995664446 0.0 1.7874933121782928 0.0 24 1.1530727081526852E-4 0.0027673744995664446 0.0 1.8746656089146356 0.0 25 1.1530727081526852E-4 0.0027673744995664446 0.0 1.9528439385273877 0.0 26 1.1530727081526852E-4 0.0027673744995664446 0.0 2.036211095326827 0.0 27 1.1530727081526852E-4 0.0027673744995664446 0.0 2.1130057376897957 0.0 28 1.1530727081526852E-4 0.0027673744995664446 0.0 2.2001780344261386 0.0 29 1.1530727081526852E-4 0.0027673744995664446 0.0 2.293922845598952 0.0 30 1.1530727081526852E-4 0.0027673744995664446 0.0 2.4026576019777504 0.0 31 1.1530727081526852E-4 0.0027673744995664446 0.0 2.5043586148368173 0.0 32 1.1530727081526852E-4 0.0027673744995664446 0.0 2.6029463313838717 0.0 33 1.1530727081526852E-4 0.0027673744995664446 0.0 2.7045320369721235 0.0 34 1.1530727081526852E-4 0.0027673744995664446 0.0 2.810499418851355 0.0 35 1.1530727081526852E-4 0.0027673744995664446 0.0 2.9322638968322785 0.0 36 1.1530727081526852E-4 0.0027673744995664446 0.0 3.041113960481892 0.0 37 1.1530727081526852E-4 0.0027673744995664446 0.0 3.155729387672269 0.0 38 1.1530727081526852E-4 0.0027673744995664446 0.0 3.2812990055900966 0.0 39 1.1530727081526852E-4 0.0027673744995664446 0.0 3.436617899378263 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCATCG 30 2.164883E-6 45.000004 21 ACGGGTA 60 0.0 45.000004 5 TCTTGCG 20 7.0323277E-4 45.0 1 CGAACTA 20 7.0323277E-4 45.0 6 CGTCTAC 20 7.0323277E-4 45.0 39 CTACGCG 20 7.0323277E-4 45.0 1 ATACCGA 25 3.8900114E-5 45.0 2 CGTTTTT 3610 0.0 44.127422 1 CGACGGT 135 0.0 43.333332 28 CACGACG 135 0.0 43.333332 26 TATGCGA 70 0.0 41.785713 2 GAGCGAT 620 0.0 41.370968 7 CTTGCGA 60 3.6379788E-12 41.250004 2 CGGAGAT 60 3.6379788E-12 41.250004 5 CGCGTAA 55 6.002665E-11 40.909092 31 GAGGGGA 6265 0.0 40.331203 7 AGCGATC 45 1.9274012E-8 40.0 8 TGGTACG 45 1.9274012E-8 40.0 1 AGGGGAA 6405 0.0 39.41452 8 TGCACGA 40 3.4569166E-7 39.375 2 >>END_MODULE