SRR1546954_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546954_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	766222
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2455	0.3204032251749493	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1616	0.2109049335571153	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1289	0.16822800702668417	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGAT	20	7.031812E-4	45.000004	8
TCCGATC	20	7.031812E-4	45.000004	14
GACTTAG	40	6.8102963E-9	45.000004	1
TCGGATG	20	7.031812E-4	45.000004	13
GTATGCG	40	6.8102963E-9	45.000004	1
CGCTAGT	40	6.8102963E-9	45.000004	28
CGTAAGA	75	0.0	45.000004	2
ATCGGTA	20	7.031812E-4	45.000004	27
CGACTAT	20	7.031812E-4	45.000004	24
TAGTGCC	20	7.031812E-4	45.000004	38
TCGACGA	20	7.031812E-4	45.000004	2
GGTTACG	20	7.031812E-4	45.000004	20
TCGTTAG	25	3.8895843E-5	45.0	1
TCGCAAA	25	3.8895843E-5	45.0	27
AATTCGG	25	3.8895843E-5	45.0	13
TATAGCG	35	1.2112105E-7	45.0	1
CGCATGA	30	2.16455E-6	44.999996	2
GAGGGGA	8685	0.0	42.35751	7
AGGGGAA	8880	0.0	42.187504	8
ATACGAG	145	0.0	41.89655	3