##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546954_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 766222 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.723664943058278 31.0 31.0 34.0 30.0 34.0 2 32.06838879593643 33.0 31.0 34.0 30.0 34.0 3 32.0983057129657 33.0 31.0 34.0 30.0 34.0 4 35.83501648347346 37.0 35.0 37.0 35.0 37.0 5 35.80894440514629 37.0 35.0 37.0 35.0 37.0 6 35.85750343895111 37.0 35.0 37.0 35.0 37.0 7 36.087229288639584 37.0 35.0 37.0 35.0 37.0 8 13.25152501494345 0.0 0.0 35.0 0.0 37.0 9 24.948727653343287 18.0 17.0 39.0 17.0 39.0 10 32.7121082401706 32.0 32.0 38.0 27.0 39.0 11 35.59613401860035 37.0 35.0 37.0 32.0 39.0 12 36.507590489440396 37.0 35.0 39.0 33.0 39.0 13 36.5900691966558 39.0 35.0 39.0 33.0 39.0 14 37.70908300727466 39.0 36.0 41.0 33.0 41.0 15 38.07667360112343 40.0 37.0 41.0 33.0 41.0 16 38.21790551563385 40.0 37.0 41.0 34.0 41.0 17 38.21761056195202 40.0 36.0 41.0 34.0 41.0 18 38.18046336440353 40.0 36.0 41.0 34.0 41.0 19 38.143411439504476 40.0 36.0 41.0 34.0 41.0 20 38.11054368055211 40.0 36.0 41.0 34.0 41.0 21 38.01178770643495 40.0 36.0 41.0 33.0 41.0 22 37.95314934836118 40.0 36.0 41.0 33.0 41.0 23 37.8797789674533 40.0 36.0 41.0 33.0 41.0 24 37.787153070520034 40.0 35.0 41.0 33.0 41.0 25 37.685229607085155 40.0 35.0 41.0 33.0 41.0 26 37.59073088478274 40.0 35.0 41.0 33.0 41.0 27 37.53132120977993 40.0 35.0 41.0 33.0 41.0 28 37.50835919615986 40.0 35.0 41.0 33.0 41.0 29 37.52614646930002 40.0 35.0 41.0 33.0 41.0 30 37.44430073790625 40.0 35.0 41.0 33.0 41.0 31 37.34077330068831 40.0 35.0 41.0 33.0 41.0 32 37.20384562176497 40.0 35.0 41.0 32.0 41.0 33 37.07605628655925 40.0 35.0 41.0 32.0 41.0 34 36.935285074038596 40.0 35.0 41.0 31.0 41.0 35 36.81137059494507 40.0 35.0 41.0 31.0 41.0 36 36.68321191508466 40.0 35.0 41.0 31.0 41.0 37 36.60232282549966 39.0 35.0 41.0 31.0 41.0 38 36.52660978149936 39.0 35.0 41.0 31.0 41.0 39 36.45540065411852 39.0 35.0 41.0 30.0 41.0 40 36.31642657088938 39.0 35.0 41.0 30.0 41.0 41 36.285742252245434 39.0 35.0 41.0 30.0 41.0 42 36.23792190774997 39.0 35.0 41.0 30.0 41.0 43 36.13756979047848 39.0 35.0 41.0 30.0 41.0 44 35.95376535782058 38.0 35.0 40.0 29.0 41.0 45 35.83579954634558 38.0 35.0 40.0 29.0 41.0 46 35.82545920111926 38.0 35.0 40.0 29.0 41.0 47 35.780574037289455 38.0 35.0 40.0 29.0 41.0 48 35.7114726541394 38.0 35.0 40.0 29.0 41.0 49 35.62609530919237 38.0 35.0 40.0 29.0 41.0 50 35.500788283291264 38.0 35.0 40.0 28.0 41.0 51 35.095490601940426 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 4.0 14 6.0 15 15.0 16 32.0 17 91.0 18 212.0 19 426.0 20 884.0 21 1299.0 22 2108.0 23 3314.0 24 5113.0 25 6974.0 26 8970.0 27 9947.0 28 10685.0 29 12209.0 30 15071.0 31 19558.0 32 26236.0 33 36472.0 34 58075.0 35 90254.0 36 80254.0 37 135662.0 38 177696.0 39 64638.0 40 13.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.06075523803806 22.710389417166304 29.298036339337685 13.930819005457948 2 30.99897940805667 24.778588972908636 30.89718123468133 13.32525038435336 3 30.89718123468133 24.17393392515485 31.980679228735276 12.948205611428543 4 27.186376794192807 26.759607528888495 31.013596581669546 15.040419095249158 5 23.953762747611005 32.04319374802603 29.458955759557938 14.544087744805031 6 21.34929563494653 41.06590518152702 27.03433208652323 10.550467097003219 7 86.21717987737235 5.110920855835515 6.738386525054096 1.9335127417380342 8 32.84883493295677 63.754760369710084 2.3597599651276004 1.0366447322055488 9 84.28458070898512 4.966445755929744 7.806745303580424 2.9422282315047075 10 52.36993978246514 22.167857357267216 13.394159917099744 12.068042943167907 11 46.94514122538899 20.439246067066723 18.624106329497195 13.991506378047095 12 41.481581056143 21.023019438230694 22.82262842883655 14.672771076789756 13 23.104661573277717 37.72875224151747 23.857707035297864 15.308879149906945 14 16.714346494880076 40.005246521243194 27.52713965404282 15.753267329833912 15 15.697669865913536 23.358634964801325 45.64460430527967 15.299090864005471 16 18.330066221016885 19.030385449647753 43.30141917094524 19.338129158390128 17 18.878601762935546 19.06927757229628 27.940335829563757 34.11178483520442 18 23.954154279047067 23.572150107932167 32.154388675866784 20.319306937153982 19 29.42554507701423 25.72896627870252 24.685665512083965 20.159823132199286 20 31.18391275635521 24.431300589124298 23.25918598004234 21.125600674478154 21 24.23161955673421 27.16340694994401 27.775892626418972 20.829080866902807 22 23.731242381450805 22.91594342109728 26.582504809311143 26.770309388140774 23 20.853355815938464 28.402342924113377 26.03736253983832 24.70693872010984 24 22.129356766054748 24.617669552688383 35.60325858563184 17.649715095625027 25 20.612563982762175 23.693916384546515 33.551764371161354 22.14175526152995 26 17.546481306984138 32.37886669920728 26.796411483878043 23.27824050993054 27 18.673830821876688 31.302024739566342 29.9749941922837 20.04915024627327 28 16.617116188258755 27.52296331872486 37.55895810874655 18.300962384269834 29 17.532777706722072 25.989073662724383 35.71288738772836 20.765261242825186 30 21.400847274027633 27.991365426730113 31.375371628588063 19.232415670654195 31 29.637363583922156 25.329995745358396 25.420178486130652 19.6124621845888 32 30.430345252420317 25.846556219998906 26.009433297399447 17.71366523018133 33 27.877821310273003 26.418583648081107 24.99588891992138 20.707706121724513 34 20.16465201991068 27.76571280908144 28.83446311904383 23.23517205196405 35 21.16449279712668 26.367032009000003 29.9635092701593 22.504965923714014 36 30.27347165703934 24.826747339543893 26.347716458154423 18.55206454526234 37 21.57181600110673 30.934376721106936 27.65960778990945 19.834199487876884 38 22.290928738668427 32.144730900443996 23.355763734270223 22.20857662661735 39 21.299310121609665 29.996919952703006 26.122716392899186 22.581053532788147 40 24.180459449089167 25.093902289414814 25.942481421833357 24.783156839662656 41 19.14797539094414 23.265711503976654 28.20318393363803 29.383129171441176 42 23.129067032792065 26.04649827334637 24.17041014223032 26.65402455163125 43 22.94361164257878 25.811840432668337 25.66253644505117 25.582011479701706 44 21.13930427474022 28.80862204426393 27.616017290028218 22.436056390967632 45 19.378326385825517 34.98751014718972 23.414101918243016 22.22006154874175 46 23.626703488023054 30.509695623461607 25.45907060877918 20.40453027973616 47 23.31543599635615 27.625936086408377 26.146469300020097 22.912158617215376 48 23.451427915147306 25.075761332877416 29.253923797541702 22.21888695443357 49 22.31141888382218 24.182939148184207 30.30570774527487 23.199934222718742 50 20.86484073806286 30.4390894544923 26.862449786093322 21.833620021351514 51 20.096786570993785 32.63062141259322 24.826616829065205 22.44597518734779 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 925.0 1 1280.5 2 1636.0 3 4120.5 4 6605.0 5 4831.5 6 3058.0 7 3246.0 8 3434.0 9 3634.5 10 3835.0 11 3765.5 12 3696.0 13 3549.0 14 3402.0 15 3284.5 16 3167.0 17 2956.0 18 2745.0 19 2820.5 20 2896.0 21 2979.5 22 3063.0 23 3294.0 24 3525.0 25 3632.0 26 4465.5 27 5192.0 28 6143.0 29 7094.0 30 8525.5 31 9957.0 32 11000.5 33 12044.0 34 14617.5 35 17191.0 36 20557.5 37 23924.0 38 31397.5 39 38871.0 40 49891.5 41 60912.0 42 65465.0 43 70018.0 44 69835.0 45 69652.0 46 68897.0 47 68142.0 48 63944.5 49 59747.0 50 55462.5 51 51178.0 52 47695.0 53 44212.0 54 41954.5 55 39697.0 56 37751.5 57 35806.0 58 33127.0 59 30448.0 60 27107.5 61 23767.0 62 20956.0 63 18145.0 64 15015.5 65 11886.0 66 9967.5 67 8049.0 68 6740.5 69 5432.0 70 4646.5 71 3861.0 72 3239.5 73 2618.0 74 1970.5 75 1012.5 76 702.0 77 543.0 78 384.0 79 272.5 80 161.0 81 102.5 82 44.0 83 34.0 84 24.0 85 14.5 86 5.0 87 5.0 88 5.0 89 3.0 90 1.0 91 1.5 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 766222.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.291758172919 #Duplication Level Percentage of deduplicated Percentage of total 1 73.99360441963245 18.714283493239744 2 5.505487562177626 2.7848692009321976 3 2.4463582060625133 1.8561810045620715 4 1.6106218478801253 1.6294183313841626 5 1.3577816536942227 1.7170342618430166 6 1.0900039240117145 1.6540869392182238 7 0.9909193742937534 1.7543465228448474 8 0.875559889277564 1.7715559188412708 9 0.799756354956132 1.8204519894125093 >10 10.965782637072602 58.897288624507524 >50 0.3273491475888533 5.066577711755096 >100 0.034703153304430315 1.53964959784193 >500 5.179575120064226E-4 0.09209339464671801 >1k 0.001553872536019268 0.7021630089707092 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2455 0.3204032251749493 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1616 0.2109049335571153 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1289 0.16822800702668417 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.011354411645711035 0.0 2 0.0 0.0 0.0 0.03667344451085978 0.0 3 0.0 0.0 0.0 0.05272623338927882 0.0 4 0.0 0.0 0.0 0.08078598630684057 0.0 5 0.0 0.0 0.0 0.1470853094794981 0.0 6 0.0 0.0 0.0 0.21338463265215565 0.0 7 0.0 0.0 1.3051047868633373E-4 0.25788870588419543 0.0 8 0.0 0.0 1.3051047868633373E-4 0.34689685234827505 0.0 9 0.0 0.0 1.3051047868633373E-4 0.4437356275335347 0.0 10 0.0 0.0 1.3051047868633373E-4 0.6147043546126318 0.0 11 0.0 0.0 1.3051047868633373E-4 0.8159515127469584 0.0 12 0.0 0.0 1.3051047868633373E-4 0.9814387997212296 0.0 13 0.0 0.0 1.3051047868633373E-4 1.0510008848610455 0.0 14 0.0 0.0020881676589813397 1.3051047868633373E-4 1.0790606377786072 0.0 15 0.0 0.0020881676589813397 1.3051047868633373E-4 1.1277410463286097 0.0 16 0.0 0.0020881676589813397 1.3051047868633373E-4 1.2269290101302233 0.0 17 0.0 0.0020881676589813397 1.3051047868633373E-4 1.3310763721219177 0.0 18 0.0 0.0020881676589813397 1.3051047868633373E-4 1.5051773506894868 0.0 19 0.0 0.0020881676589813397 1.3051047868633373E-4 1.5827005750291692 0.0 20 0.0 0.0020881676589813397 1.3051047868633373E-4 1.6595712469754196 0.0 21 0.0 0.0020881676589813397 1.3051047868633373E-4 1.771549237688294 0.0 22 0.0 0.0020881676589813397 1.3051047868633373E-4 1.872042306276771 0.0 23 0.0 0.0020881676589813397 1.3051047868633373E-4 1.9939390933698067 0.0 24 0.0 0.0020881676589813397 1.3051047868633373E-4 2.0795539673880414 0.0 25 0.0 0.0020881676589813397 1.3051047868633373E-4 2.1530313668884475 0.0 26 0.0 0.0020881676589813397 1.3051047868633373E-4 2.2293799969199526 0.0 27 0.0 0.0020881676589813397 1.3051047868633373E-4 2.311210067056284 0.0 28 0.0 0.0020881676589813397 1.3051047868633373E-4 2.3912129904910064 0.0 29 0.0 0.0020881676589813397 1.3051047868633373E-4 2.489226359984443 0.0 30 0.0 0.0020881676589813397 1.3051047868633373E-4 2.5992466935170224 0.0 31 0.0 0.0020881676589813397 1.3051047868633373E-4 2.707700901305366 0.0 32 0.0 0.0020881676589813397 1.3051047868633373E-4 2.7940988381957186 0.0 33 0.0 0.0020881676589813397 1.3051047868633373E-4 2.8909376133809785 0.0 34 0.0 0.0020881676589813397 1.3051047868633373E-4 2.993779870585809 0.0 35 0.0 0.0020881676589813397 1.3051047868633373E-4 3.1288582160261647 0.0 36 0.0 0.0020881676589813397 1.3051047868633373E-4 3.238356507643999 0.0 37 0.0 0.0020881676589813397 1.3051047868633373E-4 3.34224284867832 0.0 38 0.0 0.0020881676589813397 1.3051047868633373E-4 3.4705346492269866 0.0 39 0.0 0.0020881676589813397 1.3051047868633373E-4 3.6481594107190864 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACCGAT 20 7.031812E-4 45.000004 8 TCCGATC 20 7.031812E-4 45.000004 14 GACTTAG 40 6.8102963E-9 45.000004 1 TCGGATG 20 7.031812E-4 45.000004 13 GTATGCG 40 6.8102963E-9 45.000004 1 CGCTAGT 40 6.8102963E-9 45.000004 28 CGTAAGA 75 0.0 45.000004 2 ATCGGTA 20 7.031812E-4 45.000004 27 CGACTAT 20 7.031812E-4 45.000004 24 TAGTGCC 20 7.031812E-4 45.000004 38 TCGACGA 20 7.031812E-4 45.000004 2 GGTTACG 20 7.031812E-4 45.000004 20 TCGTTAG 25 3.8895843E-5 45.0 1 TCGCAAA 25 3.8895843E-5 45.0 27 AATTCGG 25 3.8895843E-5 45.0 13 TATAGCG 35 1.2112105E-7 45.0 1 CGCATGA 30 2.16455E-6 44.999996 2 GAGGGGA 8685 0.0 42.35751 7 AGGGGAA 8880 0.0 42.187504 8 ATACGAG 145 0.0 41.89655 3 >>END_MODULE