##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546953_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1404562 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.69425130396522 31.0 31.0 33.0 30.0 34.0 2 32.060788345405896 33.0 31.0 34.0 30.0 34.0 3 32.072884643041746 33.0 31.0 34.0 30.0 34.0 4 35.84611715253581 37.0 35.0 37.0 35.0 37.0 5 35.85216530135373 37.0 35.0 37.0 35.0 37.0 6 35.89808424263222 37.0 35.0 37.0 35.0 37.0 7 36.1234057307545 37.0 35.0 37.0 35.0 37.0 8 13.273287330854743 0.0 0.0 36.0 0.0 37.0 9 24.987238726378756 18.0 17.0 39.0 17.0 39.0 10 32.5025310381457 32.0 32.0 37.0 27.0 39.0 11 35.48337417643365 37.0 34.0 37.0 32.0 39.0 12 36.634885466074124 37.0 35.0 39.0 33.0 39.0 13 36.92189308837915 39.0 37.0 39.0 33.0 39.0 14 38.09729865965333 40.0 37.0 41.0 33.0 41.0 15 38.37379766788508 40.0 38.0 41.0 34.0 41.0 16 38.44395904203588 40.0 38.0 41.0 34.0 41.0 17 38.430533504394965 40.0 37.0 41.0 34.0 41.0 18 38.37022858371507 40.0 37.0 41.0 34.0 41.0 19 38.33929865680547 40.0 37.0 41.0 34.0 41.0 20 38.29417213337681 40.0 37.0 41.0 34.0 41.0 21 38.22131810486116 40.0 37.0 41.0 34.0 41.0 22 38.18679488694696 40.0 37.0 41.0 34.0 41.0 23 38.05379043431333 40.0 37.0 41.0 34.0 41.0 24 37.90268852496365 40.0 36.0 41.0 34.0 41.0 25 37.800639630005655 40.0 35.0 41.0 33.0 41.0 26 37.744061137920575 40.0 35.0 41.0 33.0 41.0 27 37.67972293141919 40.0 35.0 41.0 33.0 41.0 28 37.61030057768899 40.0 35.0 41.0 33.0 41.0 29 37.60933586413416 40.0 35.0 41.0 33.0 41.0 30 37.50567223091611 40.0 35.0 41.0 33.0 41.0 31 37.4118842742435 40.0 35.0 41.0 33.0 41.0 32 37.224142472884786 40.0 35.0 41.0 32.0 41.0 33 37.0055455010174 40.0 35.0 41.0 31.0 41.0 34 36.773335032558194 40.0 35.0 41.0 31.0 41.0 35 36.56986234854709 40.0 35.0 41.0 30.0 41.0 36 36.42423118381389 40.0 35.0 41.0 30.0 41.0 37 36.364924439077804 40.0 35.0 41.0 30.0 41.0 38 36.26684902482055 40.0 35.0 41.0 30.0 41.0 39 36.18177552859895 39.0 35.0 41.0 29.0 41.0 40 36.071431521000854 39.0 35.0 41.0 29.0 41.0 41 35.99741485245934 39.0 35.0 41.0 28.0 41.0 42 35.943169472048936 39.0 35.0 41.0 28.0 41.0 43 35.85817144419399 39.0 35.0 41.0 27.0 41.0 44 35.68647307844011 39.0 35.0 40.0 27.0 41.0 45 35.58698512418818 39.0 35.0 40.0 27.0 41.0 46 35.57498138209634 39.0 35.0 40.0 27.0 41.0 47 35.53217729085651 38.0 35.0 40.0 26.0 41.0 48 35.45007838742612 38.0 35.0 40.0 26.0 41.0 49 35.3517210347425 38.0 35.0 40.0 26.0 41.0 50 35.25475343915043 38.0 34.0 40.0 26.0 41.0 51 34.89025546754077 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 1.0 12 1.0 13 2.0 14 7.0 15 23.0 16 58.0 17 186.0 18 380.0 19 823.0 20 1476.0 21 2548.0 22 4330.0 23 6790.0 24 10635.0 25 16330.0 26 21194.0 27 22884.0 28 22806.0 29 23759.0 30 27252.0 31 34129.0 32 44558.0 33 62108.0 34 93957.0 35 139789.0 36 148035.0 37 256683.0 38 323951.0 39 139834.0 40 32.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.21623538156379 22.95555482776837 28.294229802600384 16.533979988067454 2 33.57779863046274 23.992034527489707 29.937873871000352 12.4922929710472 3 28.995160057014214 24.414514987590437 33.846565690941375 12.743759264453972 4 25.813171650664053 26.449241827701446 33.55451735131664 14.183069170317864 5 22.36120584210594 31.52548623699061 32.44676988271077 13.666538038192687 6 20.56712341641024 39.76065136320077 29.5455095609877 10.126715659401293 7 86.1901432617428 3.4029113702349916 8.95581683115448 1.4511285368677211 8 32.70243677388396 63.32942226829431 3.243075065394051 0.7250658924276749 9 83.69377784675935 3.731554748028211 10.197485052279644 2.3771823529328002 10 42.07147851073858 22.189764495978107 22.854954071091203 12.883802922192114 11 37.648391455841754 22.796359292078243 23.378106484441414 16.177142767638593 12 33.79744005604594 21.848732914602557 27.041882095628388 17.31194493372311 13 24.454883444091468 28.323705183537644 27.852526267975353 19.368885104395535 14 19.262232639071826 31.87093200584951 30.180867772301973 18.685967582776694 15 19.42448962737138 24.419213961363045 39.031028890145116 17.125267521120463 16 22.32154935132803 21.382893741963688 37.770778363646464 18.524778543061824 17 22.36704396103554 21.410375618876206 29.646679890243366 26.575900529844894 18 23.97957512733507 24.30950004342991 32.24528358306718 19.465641246167845 19 26.85221442698863 25.830899597169793 27.82084379329642 19.496042182545164 20 29.147022345756184 24.601833169343895 27.23916779750556 19.01197668739436 21 25.64358141541634 25.485026648877017 30.272355367723176 18.59903656798347 22 24.21117757706673 21.976673155047624 30.380502961065442 23.431646306820205 23 22.345257809908002 25.978988467579217 29.53767793803335 22.138075784479433 24 22.29727132016956 24.452035581198977 34.002842167166705 19.247850931464754 25 21.95837563596338 24.68079016803815 32.25774298322182 21.103091212776654 26 20.94446524966502 28.853906057546762 28.41134816405399 21.790280528734225 27 20.18778807913072 28.286184589929103 31.647232375644506 19.87879495529567 28 18.3609552301714 27.04957132543811 35.13657638466653 19.452897059723956 29 19.823261628892137 25.725243883858457 34.18425103341824 20.267243453831156 30 21.835632745297108 25.75429208536184 33.028374681929314 19.381700487411734 31 26.941067749234282 24.74814212544551 28.268100660561796 20.04268946475841 32 27.093926789988622 25.749593111589235 28.77131803366459 18.385162064757555 33 25.657037567583345 25.74396858237657 28.15831554605635 20.440678303983734 34 21.376272460738647 27.123758153787442 29.606311433742334 21.89365795173157 35 21.642547641186365 25.905513604953 30.212479050408596 22.239459703452034 36 26.696080343907923 26.784577683292017 27.33514077698243 19.18420119581763 37 22.46123702620461 29.41600299595176 27.882001648912613 20.240758328931012 38 22.61907982702081 30.203152299435697 25.617238683660815 21.560529189882683 39 22.493845056323607 28.075585129029545 26.851004085259316 22.579565729387525 40 24.24727423922903 25.139438486873487 27.52694434279156 23.086342931105925 41 20.887507991815244 25.032714824977464 28.67562984047696 25.404147342730333 42 22.490214031135686 26.85036331610851 26.36387713749909 24.295545515256713 43 22.212760988834955 26.184604168416914 26.95067928649643 24.6519555562517 44 21.902130343836728 27.44834332695887 28.250728696917616 22.39879763228679 45 21.57590764950212 29.694666379981804 26.101802554817798 22.627623415698274 46 22.852533387632587 28.739706755557958 27.608820400950616 20.798939455858836 47 22.691557937634652 27.13579037450821 27.557630065458127 22.615021622399013 48 22.600853504508876 26.55660625874828 28.981703904847205 21.860836331895637 49 22.152884671520372 25.240466422984532 30.230206996914337 22.37644190858075 50 21.01167481392776 28.641455485767093 28.733441457194488 21.613428243110665 51 20.407358308141614 29.717235693404774 27.683363212161517 22.192042786292095 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 830.0 1 1407.0 2 1984.0 3 13731.5 4 25479.0 5 17615.5 6 9752.0 7 9623.5 8 9495.0 9 9756.0 10 10017.0 11 9759.0 12 9501.0 13 9044.0 14 8587.0 15 8190.5 16 7794.0 17 7274.0 18 6754.0 19 6509.0 20 6264.0 21 6496.0 22 6728.0 23 6896.0 24 7064.0 25 7886.5 26 10142.5 27 11576.0 28 13397.5 29 15219.0 30 17667.0 31 20115.0 32 24347.0 33 28579.0 34 32515.5 35 36452.0 36 40728.5 37 45005.0 38 55034.5 39 65064.0 40 76635.0 41 88206.0 42 95149.0 43 102092.0 44 103637.0 45 105182.0 46 107835.5 47 110489.0 48 108932.5 49 107376.0 50 103191.0 51 99006.0 52 94028.0 53 89050.0 54 85174.5 55 81299.0 56 77277.5 57 73256.0 58 68525.0 59 63794.0 60 55924.5 61 48055.0 62 41208.5 63 34362.0 64 28597.5 65 22833.0 66 18645.0 67 14457.0 68 12222.0 69 9987.0 70 8181.5 71 6376.0 72 5148.0 73 3920.0 74 3008.0 75 1518.5 76 941.0 77 715.5 78 490.0 79 316.0 80 142.0 81 107.0 82 72.0 83 61.5 84 51.0 85 40.5 86 30.0 87 21.5 88 13.0 89 12.5 90 12.0 91 7.0 92 2.0 93 2.0 94 2.0 95 1.5 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1404562.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.345784248911 #Duplication Level Percentage of deduplicated Percentage of total 1 71.25698889039509 18.77321255533397 2 6.074476948518508 3.200737182213037 3 3.1646251415051827 2.5012359362032495 4 2.1643042616460115 2.280811725052977 5 1.7455494163416587 2.299393415937493 6 1.464376036872813 2.3148081076035876 7 1.2129786155268774 2.2369811032249713 8 1.117465122211215 2.3552396012367707 9 0.9827151440273793 2.330136104641455 >10 10.527114489201466 54.82818316301392 >50 0.2602534030032331 4.1976311749712405 >100 0.026972902383546302 1.3102008039144886 >500 0.0016347212753157851 0.30793630029000635 >1k 0.0 0.0 >5k 5.449070917719283E-4 1.0634928263628751 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9530 0.6785033341354814 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5286 0.3763450812424087 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.11965723122226E-5 0.0 0.0 0.006051708646538921 0.0 2 7.11965723122226E-5 0.0 0.0 0.01801273279499232 0.0 3 7.11965723122226E-5 0.0 0.0 0.03139768838969017 0.0 4 7.11965723122226E-5 0.0 0.0 0.048057686310750254 0.0 5 7.11965723122226E-5 0.0 0.0 0.08372716903917378 0.0 6 1.423931446244452E-4 0.0 0.0 0.14260673434138188 0.0 7 1.423931446244452E-4 0.0 0.0 0.18646382288571098 0.0 8 1.423931446244452E-4 0.0 0.0 0.2659191975861514 0.0 9 1.423931446244452E-4 0.0 0.0 0.3868821739446176 0.0 10 1.423931446244452E-4 0.0 0.0 0.5662263395991063 0.0 11 1.423931446244452E-4 0.0 0.0 0.7385220445946851 0.0 12 1.423931446244452E-4 0.0 0.0 0.8631160461410746 0.0 13 1.423931446244452E-4 0.0 0.0 0.9234907394618393 0.0 14 1.423931446244452E-4 0.0 0.0 0.9521117615313528 0.0 15 1.423931446244452E-4 0.0 0.0 0.9869268853920297 0.0 16 1.423931446244452E-4 0.0 0.0 1.050007048460659 0.0 17 1.423931446244452E-4 0.0 0.0 1.1199932790435738 0.0 18 1.423931446244452E-4 0.0 0.0 1.2166070276712597 0.0 19 1.423931446244452E-4 0.0 0.0 1.2651630899881956 0.0 20 1.423931446244452E-4 0.0 0.0 1.326036159315146 0.0 21 1.423931446244452E-4 0.0 0.0 1.4064170894556451 0.0 22 1.423931446244452E-4 0.0 0.0 1.4916393865133757 0.0 23 1.423931446244452E-4 0.0 0.0 1.584479716808514 0.0 24 1.423931446244452E-4 0.0 0.0 1.6592361177363477 0.0 25 1.423931446244452E-4 0.0 0.0 1.7276560237283936 0.0 26 1.423931446244452E-4 0.0 0.0 1.789810631356964 0.0 27 1.423931446244452E-4 0.0 0.0 1.857660964770512 0.0 28 1.423931446244452E-4 0.0 0.0 1.933485314283029 0.0 29 1.423931446244452E-4 0.0 0.0 2.020701115365502 0.0 30 1.423931446244452E-4 0.0 0.0 2.1156061462576945 0.0 31 1.423931446244452E-4 0.0 0.0 2.204744254792597 0.0 32 1.423931446244452E-4 0.0 0.0 2.29196005587507 0.0 33 1.423931446244452E-4 0.0 0.0 2.3875770524903848 0.0 34 1.423931446244452E-4 0.0 0.0 2.4813429382255823 0.0 35 1.423931446244452E-4 0.0 0.0 2.6026618974456093 0.0 36 1.423931446244452E-4 0.0 0.0 2.714369319403487 0.0 37 1.423931446244452E-4 0.0 0.0 2.822588109318065 0.0 38 1.423931446244452E-4 0.0 0.0 2.9622045876223333 0.0 39 1.423931446244452E-4 0.0 0.0 3.1671083227369103 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGTCA 40 6.8175723E-9 45.0 39 CGATATT 25 3.891249E-5 45.0 10 CGTTTTT 8460 0.0 43.7234 1 GAGCGAT 805 0.0 41.925465 7 CGAGGTA 70 0.0 41.785713 6 CACGACG 275 0.0 41.72727 26 TATGCGA 155 0.0 40.64516 2 CGGTCTA 285 0.0 40.263157 31 GTTTTTA 6065 0.0 40.065952 2 ATCGCAA 45 1.9288564E-8 40.0 33 TATACGA 80 0.0 39.375 2 AGGGGAA 9270 0.0 39.126213 8 GAGGGGA 9265 0.0 39.001617 7 AGACTTA 1125 0.0 39.0 8 ACGGTCT 295 0.0 38.898304 30 TCGGACG 35 6.24928E-6 38.571426 1 ATCGGGT 35 6.24928E-6 38.571426 4 TCACGAC 300 0.0 38.250004 25 AACGTAG 65 9.094947E-12 38.076927 1 GAGACTT 1420 0.0 37.71127 7 >>END_MODULE