SRR1546952_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546952_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	673754
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2314	0.3434487958513048	No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1651	0.24504492737705452	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	953	0.14144628454896	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	676	0.10033335609139242	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAG	60	0.0	45.000004	3
GATACGA	30	2.164159E-6	45.000004	2
AGATCGC	20	7.031205E-4	45.000004	8
GTCGACG	30	2.164159E-6	45.000004	1
CAAGTCG	20	7.031205E-4	45.000004	1
CCGATTT	20	7.031205E-4	45.000004	11
GTTTCGA	20	7.031205E-4	45.000004	2
ACGTTAG	30	2.164159E-6	45.000004	1
CGTGCCG	20	7.031205E-4	45.000004	41
ACCGCTC	20	7.031205E-4	45.000004	18
TAGCGGA	40	6.8084773E-9	45.000004	2
GGCAACG	30	2.164159E-6	45.000004	1
TCTTACC	20	7.031205E-4	45.000004	36
ATAGATC	20	7.031205E-4	45.000004	23
TCGATTG	30	2.164159E-6	45.000004	1
TAGCCGT	20	7.031205E-4	45.000004	44
ATCGTAG	20	7.031205E-4	45.000004	1
AGTATAA	30	2.164159E-6	45.000004	8
ATCCGAT	40	6.8084773E-9	45.000004	10
CCGTAGT	20	7.031205E-4	45.000004	23