##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546952_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 673754 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.776338248084613 31.0 31.0 34.0 30.0 34.0 2 32.11162234287292 33.0 31.0 34.0 30.0 34.0 3 32.138969119292796 33.0 31.0 34.0 30.0 34.0 4 35.86241120646408 37.0 35.0 37.0 35.0 37.0 5 35.82977763397323 37.0 35.0 37.0 35.0 37.0 6 35.876285706652574 37.0 35.0 37.0 35.0 37.0 7 36.12384342059565 37.0 35.0 37.0 35.0 37.0 8 13.302236424570392 0.0 0.0 37.0 0.0 37.0 9 25.036090323768022 18.0 17.0 39.0 17.0 39.0 10 32.84367588170163 32.0 32.0 38.0 27.0 39.0 11 35.70335612107683 37.0 35.0 37.0 32.0 39.0 12 36.38872496489817 37.0 35.0 39.0 33.0 39.0 13 36.26615797457232 38.0 35.0 39.0 32.0 39.0 14 37.401714869225266 39.0 35.0 41.0 33.0 41.0 15 37.88171647218421 40.0 36.0 41.0 33.0 41.0 16 38.08951932010793 40.0 36.0 41.0 34.0 41.0 17 38.10563054171107 40.0 36.0 41.0 34.0 41.0 18 38.06010650771647 40.0 36.0 41.0 34.0 41.0 19 38.00638957245523 40.0 36.0 41.0 34.0 41.0 20 37.97320535388287 40.0 36.0 41.0 34.0 41.0 21 37.84955339782769 40.0 35.0 41.0 33.0 41.0 22 37.793221264734605 40.0 35.0 41.0 33.0 41.0 23 37.735672070221476 40.0 35.0 41.0 33.0 41.0 24 37.6408229116265 40.0 35.0 41.0 33.0 41.0 25 37.51704479676558 39.0 35.0 41.0 33.0 41.0 26 37.40396643285235 39.0 35.0 41.0 33.0 41.0 27 37.337955693027425 39.0 35.0 41.0 33.0 41.0 28 37.37332913793462 39.0 35.0 41.0 33.0 41.0 29 37.45231048721047 39.0 35.0 41.0 33.0 41.0 30 37.39744179626392 39.0 35.0 41.0 33.0 41.0 31 37.262680444197734 39.0 35.0 41.0 33.0 41.0 32 37.06179555149209 39.0 35.0 41.0 32.0 41.0 33 36.93617848650991 39.0 35.0 41.0 32.0 41.0 34 36.84894783556016 39.0 35.0 41.0 32.0 41.0 35 36.752335422127366 39.0 35.0 41.0 32.0 41.0 36 36.61226946333528 39.0 35.0 41.0 31.0 41.0 37 36.49723934848624 39.0 35.0 41.0 31.0 41.0 38 36.453279683682766 39.0 35.0 41.0 31.0 41.0 39 36.45702140543878 39.0 35.0 41.0 31.0 41.0 40 36.311821525363854 39.0 35.0 41.0 30.0 41.0 41 36.30362862409722 39.0 35.0 41.0 31.0 41.0 42 36.25527121174791 39.0 35.0 41.0 30.0 41.0 43 36.132146154234334 39.0 35.0 41.0 30.0 41.0 44 35.94549197481573 38.0 35.0 40.0 30.0 41.0 45 35.84979829433295 38.0 35.0 40.0 30.0 41.0 46 35.873560676448676 38.0 35.0 40.0 30.0 41.0 47 35.84457235133298 38.0 35.0 40.0 30.0 41.0 48 35.826684516900826 38.0 35.0 40.0 30.0 41.0 49 35.784738940325404 38.0 35.0 40.0 29.0 41.0 50 35.63419734799348 38.0 35.0 40.0 29.0 41.0 51 35.17588170162997 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 0.0 13 6.0 14 7.0 15 13.0 16 29.0 17 65.0 18 148.0 19 360.0 20 629.0 21 1144.0 22 1894.0 23 2923.0 24 4236.0 25 6077.0 26 8068.0 27 8654.0 28 9367.0 29 10565.0 30 12714.0 31 17144.0 32 22827.0 33 32558.0 34 54864.0 35 92503.0 36 64139.0 37 110543.0 38 164305.0 39 47963.0 40 8.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.87617439005928 24.05299263529419 30.220970858800094 13.849862115846436 2 29.394111203792484 25.692463421367446 32.136952062622264 12.776473312217812 3 28.303653855858368 24.674584492262756 33.57813089050306 13.443630761375813 4 25.85038456172431 27.294977098466205 32.54822976932233 14.30640857048715 5 23.343534880683453 32.60225542260232 30.13043336291881 13.92377633379542 6 20.796017537558217 41.37474508500135 27.024106721444323 10.805130655996106 7 88.17862305826756 4.45889746109114 6.015251857502887 1.3472276231384155 8 33.87482671716977 63.439029675519556 1.9493761818111657 0.7367674254995147 9 88.34767585795409 3.6183829706391357 5.94341554929544 2.0905256221113344 10 61.63466190924284 17.077449632952085 11.026279621345477 10.2616088364596 11 58.564698688245265 16.91759900497808 14.336241417490655 10.181460889286 12 51.299584121207445 20.948892325685637 16.668249835993553 11.083273717113368 13 21.191859343321156 48.58271713414688 17.501343220225777 12.72408030230618 14 13.051054242349583 50.82938283112234 24.11503308329153 12.004529843236552 15 11.54991287621298 22.100944855243903 54.87818996250857 11.470952306034548 16 13.043633136129804 14.823659674005645 53.978603466547135 18.154103723317412 17 13.999026350863966 15.672782647672593 27.011639262995104 43.31655173846835 18 22.41990400056994 22.73455890428851 34.845804254965465 19.999732840176087 19 31.303116567768058 25.47457974275477 22.502871968107055 20.719431721370114 20 35.044541479531105 23.136337595027264 21.625548790804952 20.19357213463668 21 21.471635047806767 29.08257316468622 26.92421863172612 22.521573155780892 22 22.591925242744384 23.999412248387394 24.798962232506227 28.609700276361995 23 19.178810070144294 31.78816007029272 22.36587834728996 26.667151512273023 24 21.642172068737253 22.81589422845727 39.708558316536894 15.833375386268578 25 16.324207351644667 23.875628196641504 37.7634863763332 22.036678075380628 26 14.496240467589061 39.30010063020034 25.654318935397786 20.549339966812813 27 16.790549666495487 36.91584762391021 29.45986220489971 16.833740504694592 28 12.191541719974946 29.595965292970433 43.19825930532509 15.014233681729532 29 12.895062589609857 25.159479572663017 41.243539927035684 20.70191791069144 30 16.91418529611698 31.70073943902374 33.09368107647598 18.291394188383297 31 33.81278626917243 26.020624738406006 21.755566571775457 18.411022420646113 32 32.64885996966252 28.379497561424493 23.78805914324813 15.183583325664857 33 28.428922128848217 30.27187964746777 22.97708065555084 18.322117568133176 34 18.10378862314732 29.69169756320556 27.242287244305786 24.962226569341333 35 19.129830769093765 26.520955719743405 31.008943917216076 23.340269593946754 36 32.64084517494516 23.396521579092667 26.664034647660717 17.298598598301457 37 19.180145869263857 32.756762854098085 30.251100550052396 17.811990726585666 38 18.89977647628066 34.72276231384155 21.83437871982949 24.543082490048295 39 19.372946208853676 31.702965770889673 28.03204136821451 20.89204665204214 40 23.992733252789595 25.85587618032694 24.090098166393076 26.061292400490387 41 16.182167378598123 22.46739908037652 28.17022236602677 33.18021117499859 42 23.776779061794066 25.16912701074873 22.437120966999824 28.616972960457375 43 23.3653529329696 26.225447270071868 24.470800915467663 25.93839888149087 44 19.47431851981584 31.971906660294408 27.552637906416884 21.00113691347287 45 16.271220653235456 41.654075523113775 19.72144135693443 22.353262466716338 46 24.08223179380011 33.107781178293564 23.799784491075375 19.01020253683095 47 22.109404916334448 28.47804985202314 25.238143298592664 24.17440193304975 48 24.94352538166749 23.178341056231204 30.153587214324517 21.724546347776787 49 21.254790324064867 21.919127752859353 31.49042528875524 25.335656634320536 50 19.339996497237863 33.91920493236404 26.23168099929648 20.50911757110162 51 17.002793304381125 37.303377790706996 21.954749062714285 23.739079842197597 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 813.0 1 882.5 2 952.0 3 2625.0 4 4298.0 5 3263.5 6 2229.0 7 2561.5 8 2894.0 9 3146.0 10 3398.0 11 3414.5 12 3431.0 13 3321.0 14 3211.0 15 3025.0 16 2839.0 17 2590.5 18 2342.0 19 2109.0 20 1876.0 21 1845.0 22 1814.0 23 1982.0 24 2150.0 25 2304.0 26 2856.0 27 3254.0 28 4066.5 29 4879.0 30 6057.0 31 7235.0 32 8457.5 33 9680.0 34 10420.5 35 11161.0 36 14685.5 37 18210.0 38 30127.5 39 42045.0 40 56457.5 41 70870.0 42 76675.5 43 82481.0 44 78090.5 45 73700.0 46 69804.5 47 65909.0 48 60637.5 49 55366.0 50 50749.5 51 46133.0 52 41440.0 53 36747.0 54 32582.0 55 28417.0 56 26472.0 57 24527.0 58 22415.0 59 20303.0 60 17492.0 61 14681.0 62 12267.0 63 9853.0 64 7568.5 65 5284.0 66 4238.5 67 3193.0 68 2558.0 69 1923.0 70 1562.0 71 1201.0 72 1079.5 73 958.0 74 761.5 75 405.5 76 246.0 77 195.0 78 144.0 79 99.5 80 55.0 81 37.0 82 19.0 83 13.0 84 7.0 85 3.5 86 0.0 87 0.0 88 0.0 89 0.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 673754.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.242842087922206 #Duplication Level Percentage of deduplicated Percentage of total 1 76.85525268980207 17.09479249206626 2 5.1601877370413 2.2955448195808454 3 1.9048334540766283 1.2710672916845358 4 1.2273355773444592 1.0919772574304654 5 0.9058421731159644 1.0074252206599343 6 0.7834159941852114 1.0455238948688543 7 0.691744185437384 1.0770449677345477 8 0.5976482703243522 1.0634716880755528 9 0.5745458436225594 1.1501579224771772 >10 10.129747672925363 54.324896462075934 >50 1.08366466030701 15.20625168199802 >100 0.08310106238594263 2.537977680227606 >500 0.0013403397159023006 0.24282659703340595 >1k 0.0013403397159023006 0.5910420240868353 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2314 0.3434487958513048 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1651 0.24504492737705452 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 953 0.14144628454896 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 676 0.10033335609139242 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.968442487911018E-4 0.0 0.0 0.012912724822412928 0.0 2 2.968442487911018E-4 0.0 0.0 0.038292908094052135 0.0 3 2.968442487911018E-4 0.0 0.0 0.060110960380198114 0.0 4 2.968442487911018E-4 0.0 0.0 0.10063020034018351 0.0 5 2.968442487911018E-4 0.0 0.0 0.18938663072872294 0.0 6 2.968442487911018E-4 0.0 0.0 0.27131564339506703 0.0 7 2.968442487911018E-4 0.0 0.0 0.32623182942142087 0.0 8 2.968442487911018E-4 0.0 0.0 0.43517366872775526 0.0 9 2.968442487911018E-4 0.0 0.0 0.5263048531066234 0.0 10 2.968442487911018E-4 0.0 0.0 0.7192536148208396 0.0 11 2.968442487911018E-4 0.0 0.0 0.9291224987161486 0.0 12 2.968442487911018E-4 0.0 0.0 1.1364682064967333 0.0 13 2.968442487911018E-4 0.0 0.0 1.2105308465701132 0.0 14 2.968442487911018E-4 0.0 0.0 1.244964779429881 0.0 15 2.968442487911018E-4 0.0 0.0 1.2951314574755772 0.0 16 2.968442487911018E-4 0.0 0.0 1.3970974569353205 0.0 17 2.968442487911018E-4 0.0 0.0 1.5159835785761568 0.0 18 2.968442487911018E-4 0.0 0.0 1.6894890419945559 0.0 19 2.968442487911018E-4 0.0 0.0 1.7653327475606824 0.0 20 2.968442487911018E-4 0.0 0.0 1.8389501212608756 0.0 21 2.968442487911018E-4 0.0 0.0 1.9570941322797342 0.0 22 2.968442487911018E-4 0.0 0.0 2.071824434437495 0.0 23 2.968442487911018E-4 0.0 0.0 2.2263318659332634 0.0 24 2.968442487911018E-4 0.0 0.0 2.316720939690154 0.0 25 2.968442487911018E-4 0.0 0.0 2.3925646452562805 0.0 26 2.968442487911018E-4 0.0 0.0 2.4774621004105355 0.0 27 2.968442487911018E-4 0.0 0.0 2.543064679393369 0.0 28 2.968442487911018E-4 0.0 0.0 2.6254389584328996 0.0 29 2.968442487911018E-4 0.0 0.0 2.710930102084737 0.0 30 2.968442487911018E-4 0.0 0.0 2.829964645849969 0.0 31 2.968442487911018E-4 0.0 0.0 2.9512255214811343 0.0 32 2.968442487911018E-4 0.0 0.0 3.0479967465870335 0.0 33 2.968442487911018E-4 0.0 0.0 3.146994303558866 0.0 34 2.968442487911018E-4 0.0 0.0 3.247624503899049 0.0 35 2.968442487911018E-4 0.0 0.0 3.4058424885047063 0.0 36 2.968442487911018E-4 0.0 0.0 3.5251738765187293 0.0 37 2.968442487911018E-4 0.0 0.0 3.6440599981595656 0.0 38 2.968442487911018E-4 0.0 0.0 3.749142862231616 0.0 39 2.968442487911018E-4 0.0 0.0 3.868622672370034 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCGAG 60 0.0 45.000004 3 GATACGA 30 2.164159E-6 45.000004 2 AGATCGC 20 7.031205E-4 45.000004 8 GTCGACG 30 2.164159E-6 45.000004 1 CAAGTCG 20 7.031205E-4 45.000004 1 CCGATTT 20 7.031205E-4 45.000004 11 GTTTCGA 20 7.031205E-4 45.000004 2 ACGTTAG 30 2.164159E-6 45.000004 1 CGTGCCG 20 7.031205E-4 45.000004 41 ACCGCTC 20 7.031205E-4 45.000004 18 TAGCGGA 40 6.8084773E-9 45.000004 2 GGCAACG 30 2.164159E-6 45.000004 1 TCTTACC 20 7.031205E-4 45.000004 36 ATAGATC 20 7.031205E-4 45.000004 23 TCGATTG 30 2.164159E-6 45.000004 1 TAGCCGT 20 7.031205E-4 45.000004 44 ATCGTAG 20 7.031205E-4 45.000004 1 AGTATAA 30 2.164159E-6 45.000004 8 ATCCGAT 40 6.8084773E-9 45.000004 10 CCGTAGT 20 7.031205E-4 45.000004 23 >>END_MODULE