SRR1546951_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546951_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1733638
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9616	0.5546717365447689	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCG	5968	0.34424718424492307	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5348	0.30848423950098003	No Hit
GAATCTGACTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTC	3774	0.21769250558651806	No Hit
GAATCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTC	2599	0.14991595707985172	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGC	2576	0.14858926719418933	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCGAT	20	7.034281E-4	45.0	23
CGTTTTT	8105	0.0	43.05676	1
CGGTCTA	290	0.0	41.89655	31
ATTGCGA	195	0.0	41.53846	2
TATGCGA	125	0.0	41.4	2
CACGACG	295	0.0	40.42373	26
GAGGGGA	12945	0.0	39.976826	7
AGACTTA	1360	0.0	39.705883	8
AGGGGAA	12980	0.0	39.66102	8
TAACGAG	280	0.0	39.375004	3
TCGACGA	40	3.4595723E-7	39.375	2
TAGTCGA	40	3.4595723E-7	39.375	2
GTTTTTA	6100	0.0	39.061478	2
CGATGAA	960	0.0	38.906246	19
GTTAACG	70	0.0	38.57143	1
CGACGGT	310	0.0	38.467743	28
TTACGAG	265	0.0	38.207546	3
CTATGCG	65	9.094947E-12	38.076927	1
ACGTCGT	65	9.094947E-12	38.076927	37
TTAACGA	95	0.0	37.894737	2