##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546951_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1733638 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.667985473322574 31.0 31.0 34.0 30.0 34.0 2 32.00840313837145 31.0 31.0 34.0 30.0 34.0 3 32.02856247959493 33.0 31.0 34.0 30.0 34.0 4 35.79300753675219 37.0 35.0 37.0 35.0 37.0 5 35.77098160054175 37.0 35.0 37.0 35.0 37.0 6 35.82105318411341 37.0 35.0 37.0 35.0 37.0 7 36.018128928876735 37.0 35.0 37.0 35.0 37.0 8 13.362477056917303 0.0 0.0 35.0 0.0 37.0 9 24.95692526352099 18.0 17.0 38.0 17.0 39.0 10 32.54140022311463 32.0 32.0 37.0 27.0 39.0 11 35.46856321792669 37.0 34.0 37.0 32.0 39.0 12 36.52617559144412 37.0 35.0 39.0 33.0 39.0 13 36.755664100579246 39.0 35.0 39.0 33.0 39.0 14 37.939958630348436 40.0 37.0 41.0 33.0 41.0 15 38.20713609184847 40.0 37.0 41.0 33.0 41.0 16 38.313403374868344 40.0 37.0 41.0 34.0 41.0 17 38.25325760049099 40.0 37.0 41.0 33.0 41.0 18 38.2074723788934 40.0 37.0 41.0 33.0 41.0 19 38.18224681277176 40.0 37.0 41.0 34.0 41.0 20 38.10971263897076 40.0 37.0 41.0 34.0 41.0 21 38.08892686939257 40.0 37.0 41.0 33.0 41.0 22 38.029151991361516 40.0 36.0 41.0 33.0 41.0 23 37.895197844071255 40.0 36.0 41.0 33.0 41.0 24 37.81112896694697 40.0 36.0 41.0 33.0 41.0 25 37.73443475512189 40.0 35.0 41.0 33.0 41.0 26 37.64012960029718 40.0 35.0 41.0 33.0 41.0 27 37.5656434618992 40.0 35.0 41.0 33.0 41.0 28 37.506094121148706 40.0 35.0 41.0 33.0 41.0 29 37.50930701795877 40.0 35.0 41.0 33.0 41.0 30 37.418451833658466 40.0 35.0 41.0 33.0 41.0 31 37.35685823684068 40.0 35.0 41.0 33.0 41.0 32 37.15242455460713 40.0 35.0 41.0 32.0 41.0 33 36.9879801896359 40.0 35.0 41.0 31.0 41.0 34 36.7926856702495 40.0 35.0 41.0 31.0 41.0 35 36.62359616021338 40.0 35.0 41.0 30.0 41.0 36 36.495154120987195 40.0 35.0 41.0 30.0 41.0 37 36.43183698096142 40.0 35.0 41.0 30.0 41.0 38 36.35592205523875 39.0 35.0 41.0 30.0 41.0 39 36.26727379072217 39.0 35.0 41.0 30.0 41.0 40 36.16437110861668 39.0 35.0 41.0 29.0 41.0 41 36.08110343681899 39.0 35.0 41.0 29.0 41.0 42 36.037367085862215 39.0 35.0 41.0 29.0 41.0 43 35.92689881047831 39.0 35.0 41.0 29.0 41.0 44 35.71500220922707 39.0 35.0 40.0 27.0 41.0 45 35.657590569657565 38.0 35.0 40.0 27.0 41.0 46 35.636003594752765 38.0 35.0 40.0 27.0 41.0 47 35.56586899917976 38.0 35.0 40.0 27.0 41.0 48 35.507337171889404 38.0 35.0 40.0 27.0 41.0 49 35.418268404361235 38.0 35.0 40.0 27.0 41.0 50 35.295824157061624 38.0 34.0 40.0 27.0 41.0 51 34.93718008027051 38.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 4.0 12 5.0 13 7.0 14 17.0 15 32.0 16 100.0 17 236.0 18 556.0 19 1094.0 20 2098.0 21 3664.0 22 5882.0 23 9011.0 24 13373.0 25 18633.0 26 23287.0 27 25307.0 28 26028.0 29 28959.0 30 34550.0 31 44862.0 32 59056.0 33 81474.0 34 121866.0 35 182335.0 36 187247.0 37 308157.0 38 391894.0 39 163868.0 40 35.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.74310207782709 22.554247195781358 26.451715986843848 15.250934739547702 2 32.697887332880335 26.266613906709473 28.20658061256156 12.828918147848627 3 29.111556161090146 26.1759375371329 31.191863583977742 13.520642717799216 4 25.810463314717374 26.336005555946514 32.905600823239915 14.947930306096197 5 23.959500195542553 30.260354237735903 30.436111806501703 15.344033760219839 6 20.892193179891073 40.722746040407515 27.811688483985698 10.573372295715714 7 83.50416869034942 4.267557586993363 10.107473417172443 2.120800305484767 8 31.35827664137496 63.867139506632874 3.352199248055246 1.4223846039369235 9 78.95679490181918 5.4333142213080245 10.359140720265707 5.250750156607089 10 44.15120111580388 25.99245055772889 17.20313006521546 12.653218261251773 11 37.99034169763238 22.681724789142834 23.423978939086474 15.903954574138316 12 33.008505812632166 21.508527155034674 28.115269739126624 17.36769729320654 13 23.589065306598034 31.082844284677652 28.786286410427092 16.541803998297222 14 17.81975245120377 34.78286701145222 30.11816769129426 17.279212846049752 15 16.693277373938503 24.74432378616528 40.93490105777561 17.627497782120606 16 19.50955159035508 21.844006649600438 38.87732040945111 19.769121350593377 17 20.40656699956969 22.372202270600898 29.36547306877214 27.855757661057268 18 22.91297260443068 24.182268731995954 32.17240277382014 20.732355889753222 19 25.979587434054864 25.98258690683984 26.97691213505934 21.060913524045965 20 28.261782448238904 25.00245149218003 26.972643654557643 19.763122405023424 21 24.068807905687347 27.412354828401313 29.59095266716581 18.92788459874553 22 23.218457371146688 22.52332955322853 29.38854593634888 24.869667139275904 23 21.08017936847254 27.79259568606595 28.66267352238472 22.464551423076788 24 21.21844352742614 25.125083783350387 34.08595104629686 19.570521642926607 25 20.344962443139803 26.773351760863573 31.91929341650333 20.9623923794933 26 19.736588607310175 29.533789637744444 28.740371403949382 21.989250350996 27 20.63175818711865 28.370224925849573 30.334187413981468 20.663829473050313 28 17.826501264969966 27.259670127212253 35.06787460819387 19.845953999623912 29 18.895928677151748 26.25726939534089 34.05814824086689 20.788653686640462 30 20.666079077639047 27.5026274227953 31.938674625267787 19.892618874297863 31 26.43608411906061 25.669661140330334 26.30174234759506 21.592512393013997 32 26.70949759984495 26.207489683544082 27.27166801835216 19.811344698258807 33 24.534591419892735 25.512015772612273 27.344405233387825 22.608987574107168 34 20.058916567357198 27.89273193134899 28.65828967754514 23.390061823748674 35 20.79471031437936 25.432587425979357 30.173946348661023 23.598755910980262 36 25.861050576879375 25.938575411937208 27.723434765504678 20.47693924567874 37 20.807631120222332 28.990712017156984 28.681131816446108 21.520525046174576 38 20.9068444508023 29.84435043532733 25.235141361691426 24.013663752178942 39 21.256744487603523 28.310004741474287 27.17689621478071 23.256354556141478 40 22.42798092796766 25.50740119909693 27.415123572510524 24.649494300424887 41 19.8067878069124 24.92492665712219 28.550193292948123 26.71809224301728 42 21.93837467798929 26.286456572825468 26.53177883733513 25.243389911850112 43 22.067640418587963 25.75520379687109 27.419276688674337 24.75787909586661 44 20.604416839040216 27.92030400810319 28.616008647710768 22.859270505145826 45 20.117983108353645 29.99276665601469 26.224102148199336 23.665148087432325 46 23.342935491723185 28.228038379407927 27.202737826466656 21.22628830240223 47 21.075564794957195 27.498012849279952 28.898305182512154 22.528117173250703 48 22.042317946422493 25.582907158241802 29.780611638646594 22.59416325668911 49 21.452113993809547 24.81360007106443 31.196074382310496 22.538211552815525 50 20.262246212877198 27.8774461565794 29.504487095921988 22.355820534621415 51 19.884831781490714 28.89519034538929 27.27835914994941 23.94161872317058 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1306.0 1 2241.0 2 3176.0 3 14184.5 4 25193.0 5 17390.5 6 9588.0 7 9653.5 8 9719.0 9 9830.5 10 9942.0 11 9849.0 12 9756.0 13 9291.5 14 8827.0 15 8503.0 16 8179.0 17 7806.5 18 7434.0 19 7699.0 20 7964.0 21 8574.0 22 9184.0 23 9804.5 24 10425.0 25 11900.5 26 16099.5 27 18823.0 28 22060.5 29 25298.0 30 27772.0 31 30246.0 32 33332.0 33 36418.0 34 41370.0 35 46322.0 36 51802.5 37 57283.0 38 69082.5 39 80882.0 40 97056.5 41 113231.0 42 122974.5 43 132718.0 44 135849.0 45 138980.0 46 148567.5 47 158155.0 48 146911.0 49 135667.0 50 127287.5 51 118908.0 52 110075.0 53 101242.0 54 94917.0 55 88592.0 56 82458.5 57 76325.0 58 70554.5 59 64784.0 60 59166.5 61 53549.0 62 47494.0 63 41439.0 64 34986.0 65 28533.0 66 23933.5 67 19334.0 68 16153.5 69 12973.0 70 10876.5 71 8780.0 72 7095.5 73 5411.0 74 4258.0 75 2289.0 76 1473.0 77 1046.5 78 620.0 79 442.0 80 264.0 81 185.5 82 107.0 83 83.0 84 59.0 85 40.5 86 22.0 87 16.5 88 11.0 89 9.5 90 8.0 91 6.5 92 5.0 93 3.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1733638.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.758213921905277 #Duplication Level Percentage of deduplicated Percentage of total 1 75.1931950623776 18.61649208825896 2 6.189663713615841 3.064900366527113 3 2.5335455678818395 1.881781894515407 4 1.5966415860428622 1.5811997577543726 5 1.2358914243546748 1.5299232134210627 6 0.9553700105783212 1.4191953057882594 7 0.8232797073538252 1.4268054578560707 8 0.7514247159129073 1.4883147090222928 9 0.6506539874820445 1.4498127550099023 >10 9.314825875711264 51.7892135481674 >50 0.6990024336659328 10.942661385274269 >100 0.05012240360359672 2.102926766512196 >500 0.004492100628450327 0.7913338703524567 >1k 0.0011821317443290334 0.690185491924389 >5k 7.092790465974201E-4 1.2252533896159201 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9616 0.5546717365447689 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCG 5968 0.34424718424492307 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5348 0.30848423950098003 No Hit GAATCTGACTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTC 3774 0.21769250558651806 No Hit GAATCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTC 2599 0.14991595707985172 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGC 2576 0.14858926719418933 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.019958030453877916 0.0 2 0.0 0.0 0.0 0.08087040085646484 0.0 3 0.0 0.0 0.0 0.11305705112601362 0.0 4 0.0 0.0 0.0 0.2114051491718571 0.0 5 0.0 0.0 0.0 0.48441485477360324 0.0 6 0.0 0.0 0.0 0.6415410829711854 0.0 7 0.0 0.0 0.0 0.7740947071995422 0.0 8 0.0 0.0 0.0 0.9857882672161086 0.0 9 0.0 0.0 0.0 1.197770238077384 0.0 10 0.0 0.0 0.0 1.9165477452616981 0.0 11 0.0 0.0 0.0 2.2444708756960794 0.0 12 0.0 0.0 0.0 2.697910405747913 0.0 13 0.0 0.0 0.0 2.838078076276593 0.0 14 0.0 0.0 0.0 2.898586671496587 0.0 15 0.0 0.0 0.0 3.0087019320065664 0.0 16 0.0 0.0 0.0 3.154349408584722 0.0 17 0.0 0.0 0.0 3.297228141053669 0.0 18 0.0 0.0 0.0 3.4959432130583203 0.0 19 0.0 0.0 0.0 3.624747496305457 0.0 20 0.0 0.0 0.0 3.735439578504855 0.0 21 0.0 0.0 0.0 3.873184597937978 0.0 22 0.0 0.0 0.0 4.017620748968354 0.0 23 0.0 0.0 0.0 4.171113000522601 0.0 24 0.0 0.0 0.0 4.295706485436983 0.0 25 0.0 0.0 0.0 4.400168893390662 0.0 26 0.0 0.0 0.0 4.507919184974026 0.0 27 0.0 0.0 0.0 4.6261676313048055 0.0 28 0.0 0.0 0.0 4.743608527270399 0.0 29 0.0 0.0 0.0 4.873335725220605 0.0 30 0.0 0.0 0.0 5.025616651227073 0.0 31 0.0 0.0 0.0 5.158631732806964 0.0 32 0.0 0.0 0.0 5.28801283774352 0.0 33 0.0 0.0 0.0 5.4221815627022485 0.0 34 0.0 0.0 0.0 5.554158365241187 0.0 35 0.0 0.0 0.0 5.720859833483114 0.0 36 0.0 0.0 0.0 5.858316442071528 0.0 37 0.0 0.0 0.0 5.992658213537082 0.0 38 0.0 0.0 0.0 6.159128953103243 0.0 39 0.0 0.0 0.0 6.358997668486731 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGCGAT 20 7.034281E-4 45.0 23 CGTTTTT 8105 0.0 43.05676 1 CGGTCTA 290 0.0 41.89655 31 ATTGCGA 195 0.0 41.53846 2 TATGCGA 125 0.0 41.4 2 CACGACG 295 0.0 40.42373 26 GAGGGGA 12945 0.0 39.976826 7 AGACTTA 1360 0.0 39.705883 8 AGGGGAA 12980 0.0 39.66102 8 TAACGAG 280 0.0 39.375004 3 TCGACGA 40 3.4595723E-7 39.375 2 TAGTCGA 40 3.4595723E-7 39.375 2 GTTTTTA 6100 0.0 39.061478 2 CGATGAA 960 0.0 38.906246 19 GTTAACG 70 0.0 38.57143 1 CGACGGT 310 0.0 38.467743 28 TTACGAG 265 0.0 38.207546 3 CTATGCG 65 9.094947E-12 38.076927 1 ACGTCGT 65 9.094947E-12 38.076927 37 TTAACGA 95 0.0 37.894737 2 >>END_MODULE